نتایج جستجو برای: regulatory networks

تعداد نتایج: 597741  

2016
Eric M. Erkenbrack Eric H. Davidson

Classification: Biological Sciences, Developmental Biology 1 2 Title: Divergence of gene regulatory network linkages during specification of ectoderm and 3 mesoderm in early development of sea urchins 4 5 Short Title: Divergence of GRNs in early echinoid embryos 6 7 Author Affiliations: 8 Eric M. Erkenbrack and Eric H. Davidson 9 10 Division of Biology and Biological Engineering, California Ins...

2002
Dirk Repsilber Jan T. Kim Hans Liljenström Thomas Martinetz

This contribution gives an initial report of a new project exploring the perspectives and limits of reversely engineering regulatory gene networks from gene expression data. The availability of such data is currently increasing dramatically due to the microarray technology. However, inferring the underlying network from expression data is difficult. We address the reverse engineering problem by...

Journal: :BMC Proceedings 2007
Jing Hua Zhao Jian'an Luan M Fazil Baksh Qihua Tan

The Genetic Analysis Workshop 15 (GAW15) Problem 1 contained baseline expression levels of 8793 genes in immortalized B cells from 194 individuals in 14 Centre d'Etude du Polymorphisme Humain (CEPH) Utah pedigrees. Previous analysis of the data showed linkage and association and evidence of substantial individual variations. In particular, correlation was examined on expression levels of 31 gen...

2017
Ulysse Herbach Arnaud Bonnaffoux Thibault Espinasse Olivier Gandrillon

1 Univ Lyon, ENS de Lyon, Univ Claude Bernard, CNRS UMR 5239, INSERM U1210, Laboratory of Biology and Modelling of the Cell, 46 allée d’Italie Site Jacques Monod, F-69007 Lyon, France 2 Inria Team Dracula, Inria Center Grenoble Rhône-Alpes, France 3 Université de Lyon, Université Lyon 1, CNRS UMR 5208, Institut Camille Jordan 43 blvd du 11 novembre 1918, F-69622 Villeurbanne-Cedex, France 4 The...

2009
C. Capelli

Gene operation and interaction occur in every organism. Gene network is commonly used to describe gene interaction issues due to its complicity. Simulation of gene networks operation is an essential problem of bioinformatics. System providing tools for creating, setting up and simulating gene networks is described. Broad simulation abilities along with high extensibility are system’s advantages...

2016
Maurício A. Mudadu Laercio R. Porto-Neto Fabiana B. Mokry Polyana C. Tizioto Priscila S. N. Oliveira Rymer R. Tullio Renata T. Nassu Simone C. M. Niciura Patrícia Tholon Maurício M. Alencar Roberto H. Higa Antônio N. Rosa Gélson L. D. Feijó André L. J. Ferraz Luiz O. C. Silva Sérgio R. Medeiros Dante P. Lanna Michele L. Nascimento Amália S. Chaves Andrea R. D. L. Souza Irineu U. Packer Roberto A. A. Torres Fabiane Siqueira Gerson B. Mourão Luiz L. Coutinho Antonio Reverter Luciana C. A. Regitano

2009
Matthieu Manceny Marc Aiguier Pascale Le Gall Joan Hérisson Ivan Junier François Képès

Modelling frameworks for biological networks are used to reason on the models and their properties. One of the main problems with such modelling frameworks is to determine the dynamics of gene regulatory networks (GRN). Recently, it has been observed in in vivo experiments and in genomic and transcriptomic studies, that spatial information is useful to better understand both the mechanisms and ...

2014
Marinka Zitnik Blaz Zupan

MOTIVATION Epistasis analysis is an essential tool of classical genetics for inferring the order of function of genes in a common pathway. Typically, it considers single and double mutant phenotypes and for a pair of genes observes whether a change in the first gene masks the effects of the mutation in the second gene. Despite the recent emergence of biotechnology techniques that can provide ge...

Journal: :Journal of computational biology : a journal of computational molecular cell biology 2013
Emmanuel Faure Isabelle S. Peter Eric H. Davidson

The efficacy of a newly created software package for predictive modeling of developmental gene regulatory networks (GRNs) has recently been demonstrated (Peter et al., 2012 ). The program GeNeTool computes spatial gene expression patterns based on GRN interactions and thereby allows the direct comparison of predicted and observed spatial expression patterns. GeNeTool also permits in silico expl...

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