Impacts of effluent from fish farming activities on fluvial ecosystems lead to deterioration of water quality and changes in the macroinvertebrates assemblage. In this study, the influence of fish farm effluents on water quality and macroinvertebrates communities of Tajan River was investigated to evaluate the suitability of macroinvertebrates based on biological metrics and indices. Benthic...

Shared Workspaces are getting more and more popular in helping people collaborate. However, it’s difficult for user to search information across different Shared Workspaces since they are currently islands that are not interlinked. Based on semantic web technologies, SIOC provide ontology and tools to interlink online communities. By using SIOC to develop an explorer for Shared Workspaces, we m...

This paper describes how we extended the SIOC ontology to take into account particular aspects of wikis in order to enable integration capabilities between various wiki systems. In particular, we will overview the proposed extensions and detail a webservice providing SIOC data from any MediaWiki instance, as well as related query examples that show how different wikis, designed as independant d...

Argumentation, having its roots back to ancient years, is used in many aspects of everyday life, such as law, politics, education and decision making. Argument Visualisation Tools serve the need of visualizing natural language’s argumentations, targeting in the elimination of the traditional community sites’ disadvantages such as the lack of expressiveness. This paper presents ArgVis, an argume...

Using the SIOC explorer The entry page shows a list of SIOC forums in the database. In terms of SIOC each collection of posts is called a “forum”. After selecting a forum, a list of post excerpts is shown in the main column. The user can expand a specific post in order to see the full content and comments. The user can then browse posts by author or by topic or by period of time across all foru...

Here, we describe the development of WikiPathways (http://www.wikipathways.org), a public wiki for pathway curation, since it was first published in 2008. New features are discussed, as well as developments in the community of contributors. New features include a zoomable pathway viewer, support for pathway ontology annotations, the ability to mark pathways as private for a limited time and the...

Microbial ecology is flourishing, and in the process, is making contributions to how the ecology and biology of large organisms is understood. Ongoing advances in sequencing technology and computational methods have enabled the collection and analysis of vast amounts of molecular data from diverse biological communities. While early studies focused on cataloguing microbial biodiversity in envir...

Various biological networks can be constructed, each featuring gene/protein relationships of different meanings (e.g., protein interactions or gene co-expression). However, this diversity is classically not considered and the different interaction categories are usually aggregated in a single network. The multiplex framework, where biological relationships are represented by different network l...