The number of metagenomic studies conducted each year is growing dramatically. Storage and analysis of such big data is difficult and time-consuming. Interestingly, analysis shows that environmental and human metagenomes include a significant amount of non-annotated sequences, representing a 'dark matter.' We established a bioinformatics pipeline that automatically detects metagenome reads matc...

This study was designed to investigate the effects of dietary onion flesh or onion peel on lipid peroxides and DNA damage in aged rats. Sprague Dawley male rats (n=40, 16 mo old) were blocked into five groups and raised for 3 mo with either an onion-free control diet or onion diets (Allium cepa L., intermediate-day variety) containing either 5% (w/w) powdered dried onion flesh, 5% (w/w) powdere...

Onion thrips, Thrips tabaci Lindeman (Thysanoptera: Thripidae), is a well-known onion pest worldwide. Onion thrips cause both direct and indirect damage to onion by feeding and ovipositing on leaves that may cause green onions (scallions) to be unmarketable and dry bulb onion size to be reduced. Onion thrips can also transmit several plant pathogens that reduce onion bulb size and quality. One ...

In New York, onion [ Allium cepa L. (Alliaceae)] fields often border woods or other vegetable fields. Because onion maggot adults, Delia antiqua (Meigen) (Diptera: Anthomyiidae), spend a significant portion of their time outside of onion fields, surrounding habitat may affect patterns of fly activity and oviposition within onion fields. To better understand these patterns throughout the onion-g...

Onion thrips, Thrips tabaci Lindeman, colonization of onion fields may be influenced by bordering crop and non-crop habitats. Identifying habitats adjacent to onion fields associated with high T. tabaci infestations would be valuable for improving scouting efforts and management decisions. A 3-year study examined adult T. tabaci colonization patterns within onion fields early (June through earl...

Identifying locations where onion thrips, Thrips tabaci Lindeman (Thysanoptera: Thripidae), overwinter and subsequently disperse is important for designing control strategies. In upstate New York from 2003 through 2006, potential overwintering sites in the commercial onion, Allium cepa L., cropping system were investigated early in the spring before onion seedling emergence and again late in th...