نتایج جستجو برای: rpb2

تعداد نتایج: 348  

Journal: :Fungal biology 2010
Alma E Rodriguez Estrada Maria Del Mar Jimenez-Gasco Daniel J Royse

The Pleurotus eryngii species complex comprises at least six varieties (var. eryngii (DC.: Fr) Quel., ferulae Lanzi, elaeoselini Venturella et al., nebrodensis (Inzenga) Sacc., tingitanus Lewinsohn et al. and tuoliensis C.J. Mou). This species is unique among the genus Pleurotus because in nature it is found in association with certain species of the Apiaceae (Umbelliferae) and Asteraceae (Comp...

Journal: :Molecular and cellular biology 1991
D S Hekmatpanah R A Young

A sensitive phenotypic assay has been used to identify mutations affecting transcription initiation in the genes encoding the two large subunits of Saccharomyces cerevisiae RNA polymerase II (RPB1 and RPB2). The rpb1 and rpb2 mutations alter the ratio of transcripts initiated at two adjacent start sites of a delta-insertion promoter. Of a large number of rpb1 and rpb2 mutations screened, only a...

Journal: :Molecular and cellular biology 2004
Bo-Shiun Chen Michael Hampsey

The general transcription factor TFIIB is required for accurate initiation, although the mechanism by which RNA polymerase II (RNAP II) identifies initiation sites is not well understood. Here we describe results from genetic and biochemical analyses of an altered form of yeast TFIIB containing an arginine-78 --> cysteine (R78C) replacement in the "B-finger" domain. TFIIB R78C shifts start site...

Journal: :Molecular biology and evolution 1999
Y J Liu S Whelen B D Hall

In an effort to establish a suitable alternative to the widely used 18S rRNA system for molecular systematics of fungi, we examined the nuclear gene RPB2, encoding the second largest subunit of RNA polymerase II. Because RPB2 is a single-copy gene of large size with a modest rate of evolutionary change, it provides good phylogenetic resolution of Ascomycota. While the RPB2 and 18S rDNA phylogen...

Journal: :Nucleic Acids Research 2005
Marie-France Langelier Dania Baali Vincent Trinh Jack Greenblatt Jacques Archambault Benoit Coulombe

During transcription by RNA polymerase (RNAP) II, the incoming ribonucleoside triphosphate (NTP) enters the catalytic center in association with an Mg2+ ion, termed metal B [Mg(B)]. When bound to RNAP II, Mg(B) is coordinated by the beta and gamma phosphates of the NTP, Rpb1 residues D481 and D483 and Rpb2 residue D837. Rpb2 residue D837 is highly conserved across species. Notably, its neighbor...

2013
Myung Soo Park Jonathan J. Fong Hyun Lee Seung-Yoon Oh Paul Eunil Jung Young Ju Min Soon Ja Seok Young Woon Lim

Distinguishing individual Russula species has been difficult due to extensive phenotypic plasticity and obscure morphological and anatomical discontinuities. Due to highly similar macroscopic features, such as the presence of a red-cap, species identification within the Russula subgenus Amoenula is particularly difficult. Three species of the subgenus Amoneula have been reported in Korea. We us...

Journal: :mycologia iranica 2014
zahra tazick mohammad ali tajick ghanbari heshmatollah rahimian

anamorphs of pleosporaceae are important plant pathogenic fungi. despite efforts to clarify phylogenetic relationships of this group there is still uncertainty about taxonomic position of some genera. therefor to elucidate relationships among anamorphic form of some pleosporalean taxa, the internal transcribed spacer (its) and rna polymerase second largest subunit (rpb2) of some members were de...

Journal: :Molecular phylogenetics and evolution 2007
Valérie Hofstetter Jolanta Miadlikowska Frank Kauff François Lutzoni

The resolving power and statistical support provided by two protein-coding (RPB1 and RPB2) and three ribosomal RNA-coding (nucSSU, nucLSU, and mitSSU) genes individually and in various combinations were investigated based on maximum likelihood bootstrap analyses on lichen-forming fungi from the class Lecanoromycetes (Ascomycota). Our results indicate that the optimal loci (single and combined) ...

Journal: :Molecular phylogenetics and evolution 2007
P Brandon Matheny Zheng Wang Manfred Binder Judd M Curtis Young Woon Lim R Henrik Nilsson Karen W Hughes Valérie Hofstetter Joseph F Ammirati Conrad L Schoch Ewald Langer Gitta Langer David J McLaughlin Andrew W Wilson Tobias Frøslev Zai-Wei Ge Richard W Kerrigan Jason C Slot Zhu-Liang Yang Timothy J Baroni Michael Fischer Kentaro Hosaka Kenji Matsuura Michelle T Seidl Jukka Vauras David S Hibbett

A phylogeny of the fungal phylum Basidiomycota is presented based on a survey of 160 taxa and five nuclear genes. Two genes, rpb2, and tef1, are presented in detail. The rpb2 gene is more variable than tef1 and recovers well-supported clades at shallow and deep taxonomic levels. The tef1 gene recovers some deep and ordinal-level relationships but with greater branch support from nucleotides com...

Journal: :Journal of clinical microbiology 2007
Kerry O'Donnell Brice A J Sarver Mary Brandt Douglas C Chang Judith Noble-Wang Benjamin J Park Deanna A Sutton Lynette Benjamin Mark Lindsley Arvind Padhye David M Geiser Todd J Ward

In 2005 and 2006, outbreaks of Fusarium keratitis associated with soft contact lens use occurred in multiple U.S. states and Puerto Rico. A case-control study conducted by the Centers for Disease Control and Prevention (CDC) showed a significant association between infections and the use of one particular brand of lens solution. To characterize the full spectrum of the causal agents involved an...

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