In the goal of genetic improvement of livestock by marker assisted selection, we aim at reconstructing the haplotypes of sires from their offspring. We reformulated this problem into a binary weighted constraint satisfaction problem. Our results showed these problems have a small treewidth and can be solved optimally, improving haplotype reconstruction compared to previous approaches especially...

one of the most effective ways to deal with drought stress and increase water use efficiency is the development of drought-tolerant varieties which display less reduction in yield per unit water reduction. therefore, the breeding of diploid pollinators was considered as an essential measure for producing drought-tolerant hybrids. in this study, from 4 diploid pollinator populations, 45 half-sib...

Three semiexotic populations (CRE-01, CRE-02, CRE-03) obtained by incorporation of exotic germplasm (lines from CIMMYT, Colombia; selected for resistance to corn stunt complex) were evaluated in two cycles of recurrent selection with half-sib families. In cycle-I, samples comprising 50, 70, and 50 half-sib families were evaluated at Jataí (GO) and traits analyzed were ear yield, plant height, a...

Two related bet-hedging hypotheses have been proposed to explain the evolution of multiple mating by females. The first examines fitness of females within a single type of environment, and predicts that multiple mating can increase fitness by reducing the probability that all of a female’s eggs are fertilized by a poor-quality male. The second examines fitness across environments and predicts t...

Maximum likelihood methods for the estimation of linkage disequilibrium between biallelic DNA-markers in half-sib families (half-sib method) are developed for single and multifamily situations. Monte Carlo computer simulations were carried out for a variety of scenarios regarding sire genotypes, linkage disequilibrium, recombination fraction, family size, and number of families. A double hetero...

As high-throughput genomic tools, such as the DNA microarray platform, have lead to the development of novel genotyping procedures, such as Diversity Arrays Technology (DArT) and Single Nucleotide Polymorphisms (SNPs), it is likely that, in the future, high density linkage maps will be constructed from both dominant and co-dominant markers. Recently, a strictly genetic approach was described fo...

We present an algorithm to partition a single generation of individuals into full-sib families using single-locus co-dominant marker data. Pairwise likelihood ratios are used to create a graph that represents the full-sib relationships within the data set. Connected-component and minimum-cut algorithms from the graph theory are then employed to find the full-sib families within the graph. The r...

In oysters, sex is determined partly by environment, but previous studies employing controlled crosses suggest that genetic factors are also important. Sex ratios in both full- and half-sib families of the Pacific oyster show paternal control of sex ratio and suggest that a single major gene with 2 genotypes controls sex in the Pacific oyster, with FM oysters being male and FF oysters maturing ...

A simulation study was performed to see whether selection affected quantitative trait loci (QTL) mapping. Populations under random selection, under selection among full-sib families, and under selection within a full-sib family were simulated each with heritability of 0.3, 0.5, and 0.7. They were analyzed with the marker spacing of 10 cM and 20 cM. The accuracy for QTL detection decreased for t...

Recently, a Haley-Knott-type regression method using combined linkage disequilibrium and linkage analyses (LDLA) was proposed to map quantitative trait loci (QTLs). Chromosome of 5 and 25 cM with 0·25 and 0·05 cM, respectively, between markers were simulated. The differences between the LDLA approaches with regard to QTL position accuracy were very limited, with a significantly better mean squa...