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Horizontal gene transfer (HGT) plays a major role in microbial genome diversification, and is claimed to be rampant among various groups of genes in bacteria. Further, HGT is a major confounding factor for any attempt to reconstruct bacterial phylogenies. As a result, detecting and reconstructing HGT events in groups of organisms has become a major endeavor in biology. The problem of detecting ...
UNLABELLED MamMiBase, the mammalian mitochondrial genome database, is a relational database of complete mitochondrial genome sequences of mammalian species. The database is useful for phylogenetic analysis, since it allows a ready retrieval of nucleotide and aminoacid individual alignments, in three different formats (NEXUS for PAUP program, for MEGA program and for PHYLIP program) of the 13 pr...
We present a spring-embedder model for drawing rooted and unrooted phylogenetic trees with straight edges. Our heuristic strives for uniform edge lengths, and we develop it in analogy to forces in natural systems, for a simple, elegant, conceptually intuitive, and efficient algorithm. These algorithms are implemented on a web-based phylogeny visualization system that interoperates with existing...
A desirable property of one-way functions is that they be total, one-to-one, and onto—in other words, that they be permutations. We prove that one-way permutations exist exactly if PaUP-coUP: This provides the first characterization of the existence of one-way permutations based on a complexity-class separation and shows that their existence is equivalent to a number of previously studied compl...
Consensus trees are a popular approach for summarizing the shared evolutionary relationships in a collection of trees. Many popular techniques such as Bayesian analyses produce results that can contain tens of thousands of trees to summarize. We develop a fast consensus algorithm called HashCS to construct large-scale consensus trees. We perform an extensive empirical study for comparing the pe...
Nowadays, the importance of the vehicles and its dramatic effects on human life is no secret. The use of trailers with multiple axels for transporting bulky and heavy equipment is essential. Increase in trailers axles which results increment of wheels, needs considerations in order to increase in transporting speed, maneuverability, safety, better control and path following accurately. Therefo...
در این تحقیق، تنوع ژنتیکی جمعیت آرتمیا اورمیانا و آرتمیا فرانسیسکانا ی موجود در ایران با استفاده از 5 جفت آغازگر ریزماهواره ای (af-b105tail، af-a136، apdq03tail، apdq04tail و apdq05tail) ویژه ی آرتمیا فرانسیسکانا و آرتمیا پارتنوژنتیکا بررسی شد. از 50 سیست آرتمیا ی هر یک از این دو جمعیت به صورت انفرادی dna با روش گلوله ی داغ استخراج شد. با استفاده از آغازگر ها ی پنج گانه و از طریق واکنش زنجیره ا...
In this paper, we present a new method to evaluate the moving Frenet frame along intersection curves of two parametric surfaces in tangential situations. To resolve such situation, have combined perturbation with classical that works transversal situation. Unlike existent methods, our even if order contact point is more than one.
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