نتایج جستجو برای: docking strategy

تعداد نتایج: 362497  

Journal: :Molecules 2018
Yan Wang Mi-Mi Hao Ying Sun Li-Feng Wang Hao Wang Yan-Jun Zhang Hong-Yan Li Peng-Wei Zhuang Zhen Yang

When exposed to ultraviolet radiation, the human skin produces profuse reactive oxygen species (ROS), which in turn activate a variety of biological responses. Mounting ROS levels activate tyrosinase by mobilizing α-melanocyte-stimulating hormone in the epidermis and finally stimulates the melanocytes to produce melanin. Meanwhile, the Keap1-Nrf2/ARE pathway, which removes ROS, is activated at ...

2013
Andrelly Martins-José

UNLABELLED Sliding Box Docking is a program that manages simulations of ligand docking at different defined positions of a three-dimensional DNA structure. The procedure is similar to inverse docking, which is a method that performs docking simulations of a single ligand in the active sites of different targets. Sliding Box Docking manages docking simulations of one ligand into a box that slide...

2012
D. B. R. K. Gupta Udatha Nobuyoshi Sugaya Lisbeth Olsson Gianni Panagiotou

Molecular docking is the most commonly used technique in the modern drug discovery process where computational approaches involving docking algorithms are used to dock small molecules into macromolecular target structures. Over the recent years several evaluation studies have been reported by independent scientists comparing the performance of the docking programs by using default 'black box' p...

Journal: :The Journal of Cell Biology 1997
Andreas Mayer William Wickner

Vacuole inheritance in yeast involves the formation of tubular and vesicular "segregation structures" which migrate into the bud and fuse there to establish the daughter cell vacuole. Vacuole fusion has been reconstituted in vitro and may be used as a model for an NSF-dependent reaction of priming, docking, and fusion. We have developed biochemical and microscopic assays for the docking step of...

Journal: :Letters in Drug Design & Discovery 2023

Background: Novel anti-tumor bioactivity compounds were designed by the strategy of modular hybridization with advantages 5-fluorouracil and dithiocarbamate derivatives. Methods: A series novel 5-fluorouracil-dithiocarbamate conjugates synthesized, characterized evaluated for their cytotoxic activities in vitro against B16, Hela U87MG MTT assay. Colony-formation, transwell migration, cell apopt...

Journal: :The International Journal of Advanced Manufacturing Technology 2023

In the digital assembly system of large aircraft components (LAC), multiple numerical control positioners (NCPs) are usually used as actuators to adjust position and posture LAC realize docking LAC. The adjustment mechanism (PAM) composed NCPs is a redundant actuated parallel (RAPM). traditional full (FPC) method may lead interference between NCPs, resulting in deformation bracket, affecting se...

Journal: :iranian journal of pharmaceutical research 0
afshin zarghi department of medicinal chemistry, faculty of pharmacy, shahid beheshti university of medical sciences atefeh haji agha bozorgi department of medicinal chemistry, faculty of pharmacy, shahid beheshti university of medical sciences

histone deacetylase inhibitors have gained a great deal of attention recently for the treatment of cancers and inflammatory diseases. so design of new inhibitors is of great importance in pharmaceutical industries and labs. creating pharmacophor models in order to design new molecules or search a library for finding lead compounds is of great interest. this approach reduces the overall cost ass...

Journal: :Journal of medicinal chemistry 2006
Artem Cherkasov Fuqiang Ban Yvonne Li Magid Fallahi Geoffrey L Hammond

A combination of protein-ligand docking and ligand-based QSAR approaches has been elaborated, aiming to speed-up the process of virtual screening. In particular, this approach utilizes docking scores generated for already processed compounds to build predictive QSAR models that, in turn, assess hypothetical target binding affinities for yet undocked entries. The "progressive docking" has been t...

Journal: :Journal of chemical information and modeling 2007
Zhiyong Zhou Anthony K. Felts Richard A. Friesner Ronald M. Levy

Virtual screening by molecular docking has become a widely used approach to lead discovery in the pharmaceutical industry when a high-resolution structure of the biological target of interest is available. The performance of three widely used docking programs (Glide, GOLD, and DOCK) for virtual database screening is studied when they are applied to the same protein target and ligand set. Compar...

Journal: :Cell 2009
Heidi de Wit Alexander M. Walter Ira Milosevic Attila Gulyás-Kovács Dietmar Riedel Jakob B. Sørensen Matthijs Verhage

Docking, the initial association of secretory vesicles with the plasma membrane, precedes formation of the SNARE complex, which drives membrane fusion. For many years, the molecular identity of the docked state, and especially the vesicular docking protein, has been unknown, as has the link to SNARE complex assembly. Here, using adrenal chromaffin cells, we identify the vesicular docking partne...

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