نتایج جستجو برای: multilocus sequence analysis

تعداد نتایج: 3110247  

پایان نامه :وزارت علوم، تحقیقات و فناوری - دانشگاه یاسوج - دانشکده ادبیات و علوم انسانی 1392

an investigation into oral interaction in language classes: a conversation analytic point of view the aim of this thesis is to analyze the interaction between language teachers and students in english language institutes. this work is done in the context of yasuj city. learning another language, which is in most cases english, involves many variables. one of these variables is the linguistic...

Journal: :Journal of clinical microbiology 2008
Chen-Yi Chu Wei Liu Bao-Gui Jiang Ding-Ming Wang Wei-Jia Jiang Qiu-Min Zhao Pan-He Zhang Zhao-Xiao Wang Guang-Peng Tang Hong Yang Wu-Chun Cao

By using multilocus sequence analysis, five Borrelia valaisiana-related strains isolated from rodents and ticks in southwestern China were eventually classified as a new genospecies of B. burgdorferi sensu lato rather than B. valaisiana. The finding explained the differences in transmission cycle and phenotype between B. valaisiana strains from Europe and B. valaisiana-related strains from east...

Journal: :Journal of clinical microbiology 2013
Laurel B Respicio-Kingry Lori Byrd Ashley Allison Meghan Brett Christine Scott-Waldron Karen Galliher Paul Hannah Paul Mead Jeannine M Petersen

A 69-year-old patient presented with a tender, thickly crusted skin lesion of 1 week's duration. A bacterial culture swab taken from the underlying granular tissue yielded a pure isolate of a Gram-negative coccobacillus, presumptively identified as a novel Francisella species via 16S rRNA and multilocus gene sequence analysis.

2016
Vikas Gautam Prashant P. Patil Sunil Kumar Samriti Midha Mandeep Kaur Satinder Kaur Meenu Singh Swapna Mali Jayanthi Shastri Anita Arora Pallab Ray Prabhu B. Patil

Burkholderia cepacia complex (Bcc) is a complex group of bacteria causing opportunistic infections in immunocompromised and cystic fibrosis (CF) patients. Herein, we report multilocus sequence typing and analysis of the 57 clinical isolates of Bcc collected over the period of seven years (2005-2012) from several hospitals across India. A total of 21 sequence types (ST) including two STs from cy...

Journal: :Nucleic Acids Research 2005
David M. Aanensen Brian G. Spratt

The unambiguous characterization of strains of a pathogen is crucial for addressing questions relating to its epidemiology, population and evolutionary biology. Multilocus sequence typing (MLST), which defines strains from the sequences at seven house-keeping loci, has become the method of choice for molecular typing of many bacterial and fungal pathogens (and non-pathogens), and MLST schemes a...

Journal: :Journal of clinical microbiology 2009
Theodore Spilker Adam Baldwin Amy Bumford Chris G Dowson Eshwar Mahenthiralingam John J LiPuma

PCR primers targeting loci in the current Burkholderia cepacia complex multilocus sequence typing scheme were redesigned to (i) more reliably amplify these loci from B. cepacia complex species, (ii) amplify these same loci from additional Burkholderia species, and (iii) enable the use of a single primer set per locus for both amplification and DNA sequencing.

Journal: :Eukaryotic cell 2008
Frank C Odds Mette D Jacobsen

Typing strains within a microbial species on the basis of DNA sequences at multiple loci has greatly advanced study of the epidemiology and evolutionary phylogenetics of many bacterial (9, 40, 60, 72) and fungal (26, 68) pathogens. Multilocus sequence typing (MLST) schemes have now been published for five of the opportunistically pathogenic Candida species: C. albicans (6, 7), C. dubliniensis (...

Journal: :Methods in molecular biology 2010
David Griffiths Warren Fawley Melina Kachrimanidou Rory Bowden Derrick W Crook Rowena Fung Tanya Golubchik Rosalind M Harding Katie J M Jeffery Keith A Jolley Richard Kirton Tim E Peto Gareth Rees Nicole Stoesser Alison Vaughan A Sarah Walker Bernadette C Young Mark Wilcox Kate E Dingle

A robust high-throughput multilocus sequence typing (MLST) scheme for Clostridium difficile was developed and validated using a diverse collection of 50 reference isolates representing 45 different PCR ribotypes and 102 isolates from recent clinical samples. A total of 49 PCR ribotypes were represented overall. All isolates were typed by MLST and yielded 40 sequence types (STs). A web-accessibl...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2010
Ziheng Yang Bruce Rannala

In the absence of recent admixture between species, bipartitions of individuals in gene trees that are shared across loci can potentially be used to infer the presence of two or more species. This approach to species delimitation via molecular sequence data has been constrained by the fact that genealogies for individual loci are often poorly resolved and that ancestral lineage sorting, hybridi...

Journal: :Diagnostic microbiology and infectious disease 2015
Delphine Girlich Laurent Poirel Patrice Nordmann

A multilocus sequence typing (MLST) scheme including 7 housekeeping genes was used to evaluate whether the current spread of multidrug-resistant Enterobacter cloacae isolates worldwide might be associated to specific successful clones. Fifty E. cloacae clinical isolates of worldwide origin, with various β-lactamase content, and recovered at different periods of time were studied. Forty-four seq...

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