Codon usage bias (CUB) refers to an unequal occurrence of specific synonymous codons in a genome with variations within and among species. Findings suggest that CUB is significant interpreting evolutionary trends species and/or genes. However, information remained unclear for organisms the family Potamididae. This study examined compositional features codon patterns coI gene potamidids identify...

UNLABELLED Mutational signatures are patterns in the occurrence of somatic single-nucleotide variants that can reflect underlying mutational processes. The SomaticSignatures package provides flexible, interoperable and easy-to-use tools that identify such signatures in cancer sequencing data. It facilitates large-scale, cross-dataset estimation of mutational signatures, implements existing meth...

HIGHLIGHTS Mutational analysis of antibiotic resistant genes E. coli in UTI Patients. These were detected by PCR and sequenced using NGS. isolates positive for GyrA gene, GyrB tetB tetR gene. The novel mutation was gyrB gene at codon554.

Genome evolution is shaped by a multitude of mutational processes, including point mutations, insertions, and deletions of DNA sequences, as well as segmental duplications. These mutational processes can leave distinctive qualitative marks in the statistical features of genomic DNA sequences. One such feature is the match length distribution (MLD) of exactly matching sequence segments within an...

We show that, under certain assumptions, the fitness of almost all quasi-species becomes independent of mutational probabilities and the initial frequency distributions of the sequences in high dimensional sequence spaces. This result is the consequence of the concentration of measure on a high dimensional hypersphere and its extension to Lipschitz functions knows as the Levy’s Lemma. Therefore...

A new deterministic formulation is derived of the equilibrium between mutation and natural selection, which takes into account(a) the possibility of many allelic mutation states, (b) selection coefficients of the order of magnitude of the mutation rate and (c) the possibility of further mutation of already mutant alleles. The frequencies of classes of alleles 0, 1, 2, n mutant steps removed fro...

Theoretical work has shown that deleterious mutations may explain many evolutionary phenomena, but the role they play depends on their specific properties, including the overall rate at which they occur in the genome and the distribution of their selection (s) and dominance (h) coefficients. However, accurate estimates for these parameters from a range of species are still lacking. In this thes...

We have reviewed the available data on VM, the amount of genetic variation in phenotypic traits produced each generation by mutation. We use these data to make several qualitative tests of the mutation-selection balance hypothesis for the maintenance of genetic variance (MSB). To compare VM values, we use three dimensionless quantities: mutational heritability, VM/VE, the mutational coefficient...

hepatitis b vaccination is safe and effective, although breakthrough infection occasionally occurs in those who receive the vaccine and hepatitis b immunoglobulin (hbig) prophylaxis. sequence variation in their antigenic regions is one of the most powerful strategies that are used by viruses to escape recognition by b and t cell-mediated immune responses. the aim of this study was to explore th...