MOTIVATION Single nucleotide polymorphism (SNP) detection exploiting redundancy in expressed sequence tag (EST) collections that arises from the presence of transcripts of the same gene from different individuals has been used to generate large collections of SNPs for many species. A second source of redundancy, namely that EST collections can contain multiple transcripts of the same gene from ...

Single nucleotide polymorphisms (SNPs) have become the marker of choice for genome-wide association studies in many species. High-throughput sequencing of RNA was developed primarily to analyze global gene expression, while it is an efficient way to discover SNPs from the expressed genes. In this study, we conducted transcriptome sequencing of the swimbladder of Takifugu rubripes using Illumina...

Pedigrees are essential components in selective breeding programs to manage genetic diversity and obtain accurate parameter estimates ensure long-term response selection captive populations. High throughput cost-effective sequencing technologies has offered opportunities of using single nucleotide polymorphisms (SNPs) resolve penaeid shrimp pedigrees from mass spawning cohorts communal rearing....

The Sino-Danish pig genome project produced 685 851 ESTs (Gorodkin et al. 2007), of which 41 499 originated from the mitochondrial genome. In this study, the mitochondrial ESTs were assembled, and 374 putative SNPs were found. Chromatograms for the ESTs containing SNPs were manually inspected, and 112 total (52 non-synonymous) SNPs were found to be of high confidence (five of them are close to ...

In recent years, starch nanoparticles (SNPs) have attracted growing attention due to their unique properties as a sustainable alternative common nanomaterials since they are natural, renewable and biodegradable. SNPs can be obtained by the breakdown of granules through different techniques which include both physical chemical methods. The final strongly influenced synthesis method used well ope...

Silver nanoparticles (SNPs) were synthesized by using an aqueous extract of the green seaweed Chaetomorpha antennina. Synthesized SNPs characterized UV-Visible spectroscopy, FTIR, XRD, FESEM, EDAX, and DLS with Zeta potential techniques. The formation is confirmed appearance signatory brown color solution a characteristic peak at 452 nm in UV-Vis spectrum. FTIR spectrum indicated 11 intense pea...

Single-nucleotide polymorphisms (SNPs) are the most frequent type of variation in the human genome, and they provide powerful tools for a variety of medical genetic studies. In a large-scale survey for SNPs, 2.3 megabases of human genomic DNA was examined by a combination of gel-based sequencing and high-density variation-detection DNA chips. A total of 3241 candidate SNPs were identified. A ge...

X-chromosome and its independent loci recently gained importance in genetic investigations concerned with disease control-case studies, population analyses, phylogenetic investigations. Infertility lack of normal reproduction are important issues health. Aazoospermia is a kind infertility men whose semen contains no sperm can affect about 1-20% the male population. The majority cases spermatoge...

In this study, Ni NPs were produced by biosynthesis method with the help of phytoconstituents present in Sahadevi plant (Vernonia cinerea) ethanoic extract namely nickel nanoparticles (SNPs). SNPs characterized using XRD, FT-IR, HR-FESEM. XRD study shows crystalline nature SNPs. employed as bioadsorbent for elimination dyes like cationic (BG) and anionic (CR) from aqueous media. Adsorption capa...

The species of Pimpinella, one the largest genera family Apiaceae, are traditionally cultivated for medicinal purposes. In this study, high-throughput double digest restriction-site associated DNA sequencing technology (ddRAD-seq) was used to identify single nucleotide polymorphisms (SNPs) in eight Pimpinella from Iran. After double-digestion with enzymes HpyCH4IV and HinfI, a total 334,702,966...