Motivation: Searching for active connected subgraphs in biological networks has shown important to identifying functional modules. Most existing active modules identification methods need both network structural information and gene activity measures, typically requiring prior knowledge database and high-throughput data. As a pure data-driven gene network, weighted gene co-expression network (W...

The final size of plant leaves is strictly controlled by environmental and genetic factors, which coordinate cell expansion cycle activity in space time; however, the regulatory mechanisms leaf growth are still poorly understood. Ginkgo biloba a dioecious species native to China with medicinally phylogenetically important characteristics, its fan-shaped unique gymnosperms, while mechanism G. de...

Patch budding (bud grafting) is a commonly used method for pecan reproduction; however, the grafting survival rate varies with cultivars. Clarifying underlying mechanisms of successful pivotal graft technique improvement. Here, weighted gene co-expression network analysis (WGCNA) was conducted to dissect key pathways and genes related pecan. Based on transcriptome data two contrasting cultivars...