Dynamic changes of gene expression reflect an intrinsic mechanism of how an organism responds to developmental and environmental signals. With the increasing availability of expression data across a time-space scale by RNA-seq, the classification of genes as per their biological function using RNA-seq data has become one of the most significant challenges in contemporary biology. Here we develo...

From bacteria to multicellular animals, most organisms exhibit declines in survivorship or reproductive performance with increasing age ("senescence"). Evidence for senescence in clonal plants, however, is scant. During asexual growth, we expect that somatic mutations, which negatively impact sexual fitness, should accumulate and contribute to senescence, especially among long-lived clonal plan...

Extreme temperatures have a notable effect on phenology, much greater than expected from the general rule that low temperatures lead to a later — and high temperatures to an earlier — onset of phenological phases. The latter phenomenon can be seen when comparing urban areas with their rural surroundings: plants flower earlier in cities due to the urban heat island effect that contributes to hig...

Phenology ranks among the best ecosystem processes for fingerprinting climate change since temperature explains a high percentage of the interannual or spatial variation in phenological onset dates. However, roles of other environmental variables, such as foliar nutrient concentrations, are far from adequately understood. This observational study examined the effects of air temperature and 11 n...

The ecological causation hypothesis for secondary sexual dimorphism was tested in Salix glauca, a dioecious willow shrub. Plants growing in a Colorado Rocky Mountain (USA) krummholz mosaic of mesic and xeric patches were monitored for four consecutive years. Ecological causation is predicated on unique resource demands associated with sexual function. In S. glauca, seeds have twofold higher N a...

Atmospheric CO2 and tropospheric O3 are rising in many regions of the world. Little is known about how these two commonly co-occurring gases will affect reproductive fitness of important forest tree species. Here, we report on the long-term effects of CO2 and O3 for paper birch seedlings exposed for nearly their entire life history at the Aspen FACE (Free Air Carbon Dioxide Enrichment) site in ...