This paper focuses on the low-dimensional representation of multivariate functions. We study a recursive POD representation, based upon the use of the power iterate algorithm to recursively expand the modes retained in the previous step. We obtain general error estimates for the truncated expansion, and prove that the recursive POD representation provides a quasi-optimal approximation in L2 nor...

The computational complexity of one-dimensional time fractional reaction-diffusion equation is O(N²M) compared with O(NM) for classical integer reaction-diffusion equation. Parallel computing is used to overcome this challenge. Domain decomposition method (DDM) embodies large potential for parallelization of the numerical solution for fractional equations and serves as a basis for distributed, ...

To model biochemical systems in which both noise in the chemical reaction process and spatial movement of molecules is important, both the reaction-diffusion master equation (RDME) and Smoluchowski diffusion-limited reaction (SDLR) partial differential equation (PDE) models have been used. In previous work we showed that the solution to the RDME may be interpreted as an asymptotic approximation...

It has been established that there is an inherent limit to the accuracy of the reaction-diffusion master equation. Specifically, there exists a fundamental lower bound on the mesh size, below which the accuracy deteriorates as the mesh is refined further. In this paper we extend the standard reaction-diffusion master equation to allow molecules occupying neighboring voxels to react, in contrast...

In this paper, we present a novel method to estimate chemical reaction and diffusion rates for biochemical reaction–diffusion dynamics from time series of observations. Our approach leverages iterated particle filtering as means fit high-dimensional stochastic discrete spatiotemporal model sparse data, often with some species in low copy numbers. We demonstrate the feasibility on three realisti...