نتایج جستجو برای: free energy solvation

تعداد نتایج: 1134081  

2005
Dmitry V. Matyushov

We develop a linear response theory of solvation of ionic and dipolar solutes in anisotropic, axially symmetric polar solvents. The theory is applied to solvation in polar nematic liquid crystals. The formal theory constructs the solvation response function from projections of the solvent dipolar susceptibility on rotational invariants. These projections are obtained from Monte Carlo simulation...

2015
Mikhail V. Basilevsky Drew F. Parsons

A nonlocal continuum theory of solvation is applied using an oscillating dielectric function with spatial dispersion. It is found that a convergent solution cannot be calculated using a model of a fixed solute cavity inside the solvent continuum. This is attributed to the fact that the dielectric oscillations appear as a result of coupling between polarization and density fluctuations, contradi...

Journal: :J. Sci. Comput. 2012
Burak Aksoylu Stephen D. Bond Eric C. Cyr Michael J. Holst

In this article, we develop goal-oriented error indicators to drive adaptive refinement algorithms for the Poisson-Boltzmann equation. Empirical results for the solvation free energy linear functional demonstrate that goal-oriented indicators are not sufficient on their own to lead to a superior refinement algorithm. To remedy this, we propose a problem-specific marking strategy using the solva...

Journal: :Physical chemistry chemical physics : PCCP 2011
Mario Ishizaki Hideki Tanaka Kenichiro Koga

The analogue of the hydrophobic hydration is explored for Lennard-Jones solutions. The free energy of solvation and its temperature derivatives, both in the constant-pressure process and in the constant-volume process, are obtained numerically for a variety of the size and energy parameters for the solute-solvent Lennard-Jones potential. We identify in the parameter space a region in which the ...

2006
Junmei Wang Tingjun Hou Xiaojie Xu

Recently, the combination of state-of-the-art molecular mechanical force fields with continuum solvation models enables us to make relatively accurate predictions of both structures and free energies for macromolecules from molecular dynamics trajectories. The first part of this review is focused on the history and basic theory of free energy calculations based on physically effective energy fu...

Journal: :International Journal of Modern Physics C 2005

Journal: :The Journal of Physical Chemistry B 2016

Journal: :The Journal of Physical Chemistry C 2018

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2013
Sehan Lee Kwang-Hwi Cho Young-Mook Kang Harold A Scheraga Kyoung Tai No

An empirical continuum solvation model, solvation free energy density (SFED), has been developed to calculate solvation free energies of a molecule in the most frequently used solvents. A generalized version of the SFED model, generalized-SFED (G-SFED), is proposed here to calculate molecular solvation free energies in virtually any solvent. G-SFED provides an accurate and fast generalized fram...

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