نتایج جستجو برای: allelic sequence variation

تعداد نتایج: 693824  

Journal: :Molecular ecology 2002
Shawn Larson Ronald Jameson Michael Etnier Melissa Fleming Paul Bentzen

Sea otter (Enhydra lutris) populations experienced widespread reduction and extirpation due to the fur trade of the 18th and 19th centuries. We examined genetic variation within four microsatellite markers and the mitochondrial DNA (mtDNA) d-loop in one prefur trade population and compared it to five modern populations to determine potential losses in genetic variation. While mtDNA sequence var...

Journal: :Genes & development 2014
Peijin Li Daniele Filiault Mathew S Box Envel Kerdaffrec Cock van Oosterhout Amity M Wilczek Johanna Schmitt Mark McMullan Joy Bergelson Magnus Nordborg Caroline Dean

Relating molecular variation to phenotypic diversity is a central goal in evolutionary biology. In Arabidopsis thaliana, FLOWERING LOCUS C (FLC) is a major determinant of variation in vernalization--the acceleration of flowering by prolonged cold. Here, through analysis of 1307 A. thaliana accessions, we identify five predominant FLC haplotypes defined by noncoding sequence variation. Genetic a...

Journal: :Cell 2002
Piet Borst

Cells often express only one gene from a set of two or more. African trypanosomes appear to accomplish this monoallelic expression by segregating the selected gene into a specific nuclear body. The possibility that such a structure might explain monoallelic expression in other multigene systems is discussed here.

Journal: :Nucleic acids research 1986
M Colb T Yang-Feng U Francke B Mermer D R Parkinson T G Krontiris

A highly polymorphic locus associated with the variable tandem repetition of a 35 bp consensus sequence was mapped to chromosome 10, band q26. Examination of leukocyte DNA from a cancer patient revealed the twenty-fold amplification of one allelic fragment of this locus, while the other allelic fragment demonstrated a normal copy number. In another patient, Southern blotting of leukocyte DNA de...

Journal: :Physiological genomics 2004
Tomi Pastinen Robert Sladek Scott Gurd Alya'a Sammak Bing Ge Pierre Lepage Karine Lavergne Amelie Villeneuve Tiffany Gaudin Helena Brändström Allon Beck Andrei Verner Jade Kingsley Eef Harmsen Damian Labuda Kenneth Morgan Marie-Claude Vohl Anna K Naumova Daniel Sinnett Thomas J Hudson

The identification of human sequence polymorphisms that regulate gene expression is key to understanding human genetic diseases. We report a survey of human genes that demonstrate allelic differences in gene expression, reflecting the presence of putative allele-specific cis-acting factors of either genetic or epigenetic nature. The expression of allelic transcripts in heterozygous samples is a...

2014
Joseph Evans Jeongwoon Kim Kevin L Childs Brieanne Vaillancourt Emily Crisovan Aruna Nandety Daniel J Gerhardt Todd A Richmond Jeffrey A Jeddeloh Shawn M Kaeppler Michael D Casler C Robin Buell

Switchgrass (Panicum virgatum) is a polyploid, outcrossing grass species native to North America and has recently been recognized as a potential biofuel feedstock crop. Significant phenotypic variation including ploidy is present across the two primary ecotypes of switchgrass, referred to as upland and lowland switchgrass. The tetraploid switchgrass genome is approximately 1400 Mbp, split betwe...

Journal: :Genetics 2003
Cynthia Weinig Lisa A Dorn Nolan C Kane Zachary M German Solveig S Halldorsdottir Mark C Ungerer Yuko Toyonaga Trudy F C Mackay Michael D Purugganan Johanna Schmitt

Genetic variation for quantitative traits is often greater than that expected to be maintained by mutation in the face of purifying natural selection. One possible explanation for this observed variation is the action of heterogeneous natural selection in the wild. Here we report that selection on quantitative trait loci (QTL) for fitness traits in the model plant species Arabidopsis thaliana d...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 1974
F J Ayala M L Tracey

We describe allelic variation at 28 loci in six Caribbean populations of four sympatric species of Drosophila. Within any one species the allelic frequencies are very similar from population to population, although there is evidence of local as well as regional genetic differentiation. The genetic distance is greater between populations from different islands than between populations of the sam...

Journal: :Genome research 2014
Karyn Meltz Steinberg Valerie A Schneider Tina A Graves-Lindsay Robert S Fulton Richa Agarwala John Huddleston Sergey A Shiryev Aleksandr Morgulis Urvashi Surti Wesley C Warren Deanna M Church Evan E Eichler Richard K Wilson

A complete reference assembly is essential for accurately interpreting individual genomes and associating variation with phenotypes. While the current human reference genome sequence is of very high quality, gaps and misassemblies remain due to biological and technical complexities. Large repetitive sequences and complex allelic diversity are the two main drivers of assembly error. Although inc...

Journal: :Nucleic Acids Research 2005
Joke Reumers Joost Schymkowitz Jesper Ferkinghoff-Borg François Stricher Luis Serrano Frederic Rousseau

Single nucleotide polymorphisms (SNPs) are an increasingly important tool for genetic and biomedical research. However, the accumulated sequence information on allelic variation is not matched by an understanding of the effect of SNPs on the functional attributes or 'molecular phenotype' of a protein. Towards this aim we developed SNPeffect, an online resource of human non-synonymous coding SNP...

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