نتایج جستجو برای: carboxylcytosine

تعداد نتایج: 116  

Journal: :Genes & development 2011
Hao Wu Yi Zhang

Ten-eleven translocation 1-3 (Tet1-3) proteins have recently been discovered in mammalian cells to be members of a family of DNA hydroxylases that possess enzymatic activity toward the methyl mark on the 5-position of cytosine (5-methylcytosine [5mC]), a well-characterized epigenetic modification that has essential roles in regulating gene expression and maintaining cellular identity. Tet prote...

2015
Huan Meng Ying Cao Jinzhong Qin Xiaoyu Song Qing Zhang Yun Shi Liu Cao

DNA methylation regulates many cellular processes, including embryonic development, transcription, chromatin structure, X-chromosome inactivation, genomic imprinting and chromosome stability. DNA methyltransferases establish and maintain the presence of 5-methylcytosine (5mC), and ten-eleven translocation cytosine dioxygenases (TETs) oxidise 5mC to 5-hydroxymethylcytosine (5hmC), 5-formylcytosi...

Journal: :Cell 2013
Chun-Xiao Song Keith E. Szulwach Qing Dai Ye Fu Shi-Qing Mao Li Lin Craig Street Yujing Li Mickael Poidevin Hao Wu Juan Gao Peng Liu Lin Li Guo-Liang Xu Peng Jin Chuan He

TET proteins oxidize 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC). 5fC and 5caC are excised by mammalian DNA glycosylase TDG, implicating 5mC oxidation in DNA demethylation. Here, we show that the genomic locations of 5fC can be determined by coupling chemical reduction with biotin tagging. Genome-wide mapping of 5fC in mouse em...

2016
Hao Lian Wen-Bin Li Wei-Lin Jin

The Ten-eleven translocation (TET) proteins have been recently identified as critical regulators in epigenetic modification, especially in the methylation of cytosine in DNA. TET-mediated DNA oxidation plays prominent roles in a wide variety of physiological and pathological processes, especially in tumor and neural development. TET proteins execute stepwise enzymatic conversion of 5-methylcyto...

2015
Marta W. Szulik Pradeep S. Pallan Boguslaw Nocek Markus Voehler Surajit Banerjee Sonja Brooks Andrzej Joachimiak Martin Egli Brandt F. Eichman Michael P. Stone

I our recently published article on the structures and base pair opening dynamics of Dickerson−Drew dodecamer (DDD) duplexes with incorporated 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), or 5-carboxylcytosine (5caC), we inadvertently failed to reference two publications by others who had reported structures of the DDD with single 5hmC residues inserted per strand. Spingler and co-wo...

2012
Anthony Alioui Lee M. Wheldon Abdulkadir Abakir Zoltan Ferjentsik Andrew D. Johnson Alexey Ruzov

5-Methylcytosine (5-mC) is an epigenetic modification associated with gene repression. Recent studies demonstrated that 5-mC can be enzymatically oxidised into 5-hydroxymethylcytosine and further into 5-formylcytosine (5-fC) and 5-carboxylcytsine (5-caC). 5-caC has been found in embryonic stem cells and in mouse pre-implantation embryos but no detectable levels of this modification have been re...

Journal: :Cytogenetic and genome research 2015
Duo Li Bin Guo Haijing Wu Lina Tan Qianjin Lu

DNA methylation plays an important role in the epigenetic regulation of mammalian gene expression. TET (ten-eleven translocation) proteins, newly discovered demethylases, have sparked great interest since their discovery. TET proteins catalyze 5-methylcytosine to 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxylcytosine in 3 consecutive Fe(II)- and 2-oxoglutarate (2-OG)-dependent oxidati...

2014
Udo Müller Christina Bauer Michael Siegl Andrea Rottach Heinrich Leonhardt

The discovery of hydroxymethyl-, formyl- and carboxylcytosine, generated through oxidation of methylcytosine by TET dioxygenases, raised the question how these modifications contribute to epigenetic regulation. As they are subjected to complex regulation in vivo, we dissected links to gene expression with in vitro modified reporter constructs. We used an Oct4 promoter-driven reporter gene and d...

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