The aim of our study was to analyze the presence of 5-methyl-cytosine (5-mC) and 5-hydroxymethyl-cytosine (5-hmC) in the genome of crustacean Daphnia pulex. First, the presence of 5-mC and 5-hmC in genomic DNA was demonstrated by using antibodies specific to either 5-mC or 5-hmC. Then, analysis of 5-mC and 5-hmC using pairs of restriction enzymes with different sensitivity to methylation and hy...

Biomonitoring using benthic macroinvertebrates has been used to assess water quality in Europe since the early 20th century. Most methods use community-level measurements, and the use of single-species responses has been limited, despite their potential benefits as sensitive, early warning indicators. Here we evaluate a single-species in situ assay in which the response is feeding inhibition of...

Knowledge of the genome-wide rate and spectrum of mutations is necessary to understand the origin of disease and the genetic variation driving all evolutionary processes. Here, we provide a genome-wide analysis of the rate and spectrum of mutations obtained in two Daphnia pulex genotypes via separate mutation-accumulation (MA) experiments. Unlike most MA studies that utilize haploid, homozygous...

Telomeres, comprised of short repetitive sequences, are essential for genome stability and have been studied in relation to cellular senescence and aging. Telomerase, the enzyme that adds telomeric repeats to chromosome ends, is essential for maintaining the overall telomere length. A lack of telomerase activity in mammalian somatic cells results in progressive shortening of telomeres with each...

Many organisms have the ability to alter their development in the presence of predators, leading to predator-induced defenses that reduce vulnerability to predation. In the water flea Daphnia pulex, small protuberances called 'neckteeth' form in the dorsal neck region in response to kairomone(s) released by predatory phantom midges (Chaoborus larvae). Although previous studies suggested that ka...

Changing environmental calcium (Ca) and rising cyanobacterial blooms in lake habitats could strongly reduce Daphnia growth and survival. Here, we assessed the effects of maternal Ca in Daphnia on transfer of resistance to their offspring against Microcystis aeruginosa PCC7806 (M. aeruginosa). Laboratory microcosm experiments were performed to examine effects in Daphnia carinata (D. carinata) an...

The raptorial ciliate Mesodinium pulex (Claparéde & Lachmann, 1858) was fed 3 different prey species: Rhodomonas salina, Heterocapsa rotundata and Gymnodinium simplex. Each prey displayed different motility patterns, including dramatic and effective escape responses. M. pulex only fed while motionless and responded only to motile prey by either an attack or an escape. Both the attack and escape...

Large-scale transcription start site (TSS) profiling produces a high-resolution, quantitative picture of transcription initiation and core promoter locations within a genome. However, application of TSS profiling to date has largely been restricted to a small set of prominent model systems. We sought to characterize the cis-regulatory landscape of the water flea Daphnia pulex, an emerging model...

In shallow subarctic ponds Daphnia and their algal food are often exposed to solar ultraviolet radiation (UVR). It was previously demonstrated that direct exposure of Daphnia to UVR may result in sublethal damage to Daphnia‘s intestinal system. This led to the hypothesis that, as consequences of such exposures, Daphnia may be experiencing a situation similar to starvation. We examined, in contr...