Low temperature combined with low light (LL) is an adverse factor seriously affecting pepper productivity and quality. However, little known about the molecular mechanisms related to LL stress responses. Therefore, transcriptome physiological changes in Hangjiao No. 2 (H2) Xiangtela (X2) were studied under normal conditions LL. We found 8,392 8,028 differentially expressed genes H2 X2, respecti...

Microarray technology produces vast amounts of data by measuring simultaneously the expression levels of thousands of genes under hundreds of biological conditions. Nowadays, one of the principal challenges in bioinformatics is the interpretation of this large amount of data using different sources of information. We have developed a novel data analysis method named CGGA (Co-expressed Gene Grou...

Microarray technology produces vast amounts of data by measuring simultaneously the expression levels of thousands of genes under hundreds of biological conditions. Nowadays, one of the principal challenges in bioinformatics is the interpretation of huge data using different sources of information. We propose a novel data analysis method named CGGA (Co-expressed Gene Groups Analysis) that autom...

This paper presents a mapping of enriched knowledge resources for data privacy management. An ontology, enriched through natural language techniques, is used for an integrated visualization for global inspection of heterogeneous data. The visualization helps stakeholders in exploring and maintaining a knowledge base for data privacy accountability. The integration of resources on the basis of c...

Gene set enrichment analysis is a microarray data analysis method that uses predefined gene sets and ranks of genes to identify significant biological changes in microarray data sets. In this paper we present a novel method integrating gene interaction information with Gene Ontology (GO) for the construction of new interesting enriched gene sets. The experimental results show that the introduce...

Rapeseed is the most important oil crop used in food and biodiesel industries. In this study, based on single nucleotide polymorphism (SNP) identified from genotyping-by-sequencing (GBS), an association study of flowering time, crude fat fatty acid contents were investigated 46 rapeseed mutant lines derived gamma rays. A total 623,026,394 clean data reads generated with 6.6 million average. set...

Systemic lupus erythematosus are all involved autoimmune illnesses with similar clinical, genetic and pathogenic characteristics. However, it is still uncertain what characteristics these disorder’s deoxyribonucleic acid methylation patterns have in common. To determine the typical of illnesses, we undertook to analyze data for numerous inflammatory disorders a unified manner, which included sa...