Analysis of genome rearrangements allows to compare molecular data from species that diverged a very long time ago. Results and complexities are tightly related to the type of data and genome-level mutations considered. For sorted and signed data, Hannenhalli and Pevzner (HP) developed the rst polynomial algorithm in the eld. This algorithm solves the problem of sorting by reversals. In this pa...

This paper explores a single-item capacitated lot sizing problem with minimum order quantity, which plays the role of minor set-up cost. We work out the necessary and sufficient solvability conditions and apply the general dynamic programming technique to develop an O(T ) exact algorithm that is based on the concept of minimal sub-problems. An investigation of the properties of the optimal solu...

From 13.03. to 16.03.2007, the Dagstuhl Seminar 07112 Cutting, Packing, Layout and Space Allocation was held in the International Conference and Research Center (IBFI), Schloss Dagstuhl. During the seminar, several participants presented their current research, and ongoing work and open problems were discussed. Abstracts of the presentations given during the seminar as well as abstracts of semi...

In this paper we worked upon on optimal wiring on rectangular structure. Here we are given a rectangle partitioned into smaller rectangles by axis-parallel line segments. Find a subset of the segments such that the resulting structure from these segments is connected and it touches every smaller rectangle. Here we reduce the problem of exact cover by 3-sets (X3C), which is known to be NP-comple...

A new fast and exact algorithm for determining the -NN classification of multichannel image data, and a new distance transform algorithm are described. Complexity analysis and empirical studies with magnetic resonance images (MRI) demonstrate the effectiveness of the new classification algorithm.

This article presents the preliminary results on a new branch-and-bound algorithm proposed for the single machine total tardiness problem with arbitrary release dates. The algorithm relies on dominance properties from the literature as well as a new branching condition. A new lower bounding technique for the problem is also introduced. The performance of the algorithm is compared to the perform...

The syntenic distance between two genomes is given by the minimum number of fusions, fissions, and translocations required to transform one into the other, ignoring the order of genes within chromosomes. Computing this distance is NP-hard. In the present work, we give a tight connection between syntenic distance and the incomplete gossip problem, a novel generalization of the classical gossip p...

A q-analog of a Steiner system (briefly, q-Steiner system), denoted by S = Sq[t, k, n], is a set of k-dimensional subspaces of F n q such that each t-dimensional subspace of Fq is contained in exactly one element of S. Presently, q-Steiner systems are known only for t = 1 and in the trivial cases t = k and k = n. In this paper, the first known nontrivial q-Steiner systems with t ≥ 2 are constru...