BACKGROUND Periodontitis is an infectious and inflammatory disease of polymicrobial etiology that can lead to the destruction of bones and tissues that support the teeth. The management of chronic periodontitis (CP) relies heavily on elimination or at least control of known pathogenic consortia associated with the disease. Until now, microbial plaque obtained from the subgingival (SubG) sites h...

Woody encroachment has altered oak savannas throughout much of the Midwestern United States. To help understand restoration options, we assessed the impacts of mechanically removing encroaching mesophytic trees and shrubs on structure, composition, and regeneration dynamics in Quercus alba dominated oak savannas in Iowa (n = 4), relative to control sites (n = 4). We monitored stand structure an...

BACKGROUND Lignans in plant foods are metabolized by gut bacteria to the enterolignans, enterodiol (END) and enterolactone (ENL). Enterolignans have biologic activities important to the prevention of cancer and chronic diseases. We examined the composition of the gut microbial community (GMC) as a contributor to human enterolignan exposure. METHODS We evaluated the association between the GMC...

Big sagebrush (Artemisia tridentata Nutt.) occupies large portions of the western United States and provides valuable wildlife habitat. However, information is lacking quantifying differences in native perennial forb characteristics between mountain big sagebrush [A. tridentata spp. vaseyana (Rydb.) Beetle] and Wyoming big sagebrush [A. tridentata spp. wyomingensis (Beetle & A. Young) S.L. Wels...

Gene expression profiling experiments, in particular, microarray experiments, are popular in genomics research. However, in addition to the great opportunities provided by such experiments, statistical challenges also arise in the analysis of expression profiling data. The current thesis discusses statistical issues associated with gene expression profiling experiments and develops new statisti...

Honey bees (Apis mellifera) are the primary pollinators of major horticultural crops. Over the last few decades, a substantial decline in honey bees and their colonies have been reported. While a plethora of factors could contribute to the putative decline, pathogens, and pesticides are common concerns that draw attention. In addition to potential direct effects on honey bees, indirect pesticid...

The oligochaetes are considered good indicators of ecological conditions and specific types of habitats. Among the factors that influence the distribution of these invertebrates are the water flow and the nature of the substrate. The aim of this study is to describe the composition and distribution of oligochaete species in a first-order stream in Atlantic Forest and try to identify if some spe...

Water flow management has significantly changed the natural dynamic of floods, which are responsible for the structure and dynamic of aquatic communities in river-floodplain systems. With the aim to elaborate a conceptual framework that describes the main ecological factors associated with zooplankton community structure in the Upper Paraná River, we investigated the mechanisms that regulate th...