نتایج جستجو برای: p2 hmc tio2

تعداد نتایج: 39177  

2017
Jinho Park Venkat Subramanian Yinjie Tang

......................................................................................................................................... ii Acknowledgements ................................................................................................................... iv List of Tables ............................................................................................................

2011
Keith E. Szulwach Xuekun Li Yujing Li Chun-Xiao Song Ji Woong Han SangSung Kim Sandeep Namburi Karen Hermetz Julie J. Kim M. Katharine Rudd Young-Sup Yoon Bing Ren Chuan He Peng Jin

Covalent modification of DNA distinguishes cellular identities and is crucial for regulating the pluripotency and differentiation of embryonic stem (ES) cells. The recent demonstration that 5-methylcytosine (5-mC) may be further modified to 5-hydroxymethylcytosine (5-hmC) in ES cells has revealed a novel regulatory paradigm to modulate the epigenetic landscape of pluripotency. To understand the...

2014
Bailin Zhao Ying Yang Xiaoli Wang Zechen Chong Ruichuan Yin Shu-Hui Song Chao Zhao Cuiping Li Hua Huang Bao-Fa Sun Danni Wu Kang-Xuan Jin Maoyong Song Ben-Zhan Zhu Guibin Jiang Jannie M. Rendtlew Danielsen Guo-Liang Xu Yun-Gui Yang Hailin Wang

DNA methylation has been proven to be a critical epigenetic mark important for various cellular processes. Here, we report that redox-active quinones, a ubiquitous class of chemicals found in natural products, cancer therapeutics and environment, stimulate the conversion of 5 mC to 5 hmC in vivo, and increase 5 hmC in 5751 genes in cells. 5 hmC increase is associated with significantly altered ...

Journal: :Bio-protocol 2012
Keith E Szulwach Chun-Xiao Song Chuan He Peng Jin

5-Hydroxymethylcytosine (5-hmC) is a newly discovered DNA modification in mammalian genomes. This protocol is to be a highly efficient and selective chemical approach to label and capture 5-hmC, taking advantage of a bacteriophage enzyme that adds a glucose moiety to 5-hmC specifically, which could in turn be used for high-throughput mapping via next-generation sequencing.

2016
Kai Xu

In this thesis we look at the design and development of a Probabilistic Programming Language (PPL) in Julia named Turing and the challenges of implementing the Hamiltonian Monte Carlo (HMC) sampler inside the Turing framework. This dissertation starts with a review of three important fields behind the project, which are Bayesian inference, general inference algorithms and probabilistic programm...

2014
Desmond Y. H. Yap Susan Yung Qing Zhang Colin Tang Tak Mao Chan

In vitro data showed that immunoglobulin G (IgG) from patients with lupus nephritis (LN) could bind to cultured human mesangial cells (HMC). The clinical relevance of such binding was unknown. Binding of IgG and subclasses was measured in 189 serial serum samples from 23 patients with Class III/IV±V LN (48 during renal flares, 141 during low level disease activity (LLDA)). 64 patients with non-...

Journal: :Clinical chemistry 2013
Ming-Luan Chen Fan Shen Wei Huang Jia-Hui Qi Yinsheng Wang Yu-Qi Feng Song-Mei Liu Bi-Feng Yuan

BACKGROUND 5-Methylcytosine (5-mC) is an important epigenetic modification involved in development and is frequently altered in cancer. 5-mC can be enzymatically converted to 5-hydroxymethylcytosine (5-hmC). 5-hmC modifications are known to be prevalent in DNA of embryonic stem cells and neurons, but the distribution of 5-hmC in human liver tumor and matched control tissues has not been rigorou...

Journal: :Cell 2012
Christine Guo Lian Yufei Xu Craig Ceol Feizhen Wu Allison Larson Karen Dresser Wenqi Xu Li Tan Yeguang Hu Qian Zhan Chung-wei Lee Di Hu Bill Q. Lian Sonja Kleffel Yijun Yang James Neiswender Abraham J. Khorasani Rui Fang Cecilia Lezcano Lyn M. Duncan Richard A. Scolyer John F. Thompson Hojabr Kakavand Yariv Houvras Leonard I. Zon Martin C. Mihm Ursula B. Kaiser Tobias Schatton Bruce A. Woda George F. Murphy Yujiang G. Shi

DNA methylation at the 5 position of cytosine (5-mC) is a key epigenetic mark that is critical for various biological and pathological processes. 5-mC can be converted to 5-hydroxymethylcytosine (5-hmC) by the ten-eleven translocation (TET) family of DNA hydroxylases. Here, we report that "loss of 5-hmC" is an epigenetic hallmark of melanoma, with diagnostic and prognostic implications. Genome-...

Journal: :Blood 2012
Viviane Ghanim Harald Herrmann Gerwin Heller Barbara Peter Emir Hadzijusufovic Katharina Blatt Karina Schuch Sabine Cerny-Reiterer Irina Mirkina Heidrun Karlic Winfried F Pickl Sabine Zöchbauer-Müller Peter Valent

Aggressive systemic mastocytosis (ASM) and mast cell leukemia (MCL) are advanced hematopoietic neoplasms with poor prognosis. In these patients, neoplastic mast cells (MCs) are resistant against various drugs. We examined the effects of 2 demethylating agents, 5-azacytidine and decitabine on growth and survival of neoplastic MCs and the MC line HMC-1. Two HMC-1 subclones were used, HMC-1.1 lack...

2010
Yun Huang William A. Pastor Yinghua Shen Mamta Tahiliani David R. Liu Anjana Rao

BACKGROUND We recently showed that enzymes of the TET family convert 5-mC to 5-hydroxymethylcytosine (5-hmC) in DNA. 5-hmC is present at high levels in embryonic stem cells and Purkinje neurons. The methylation status of cytosines is typically assessed by reaction with sodium bisulfite followed by PCR amplification. Reaction with sodium bisulfite promotes cytosine deamination, whereas 5-methylc...

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