نتایج جستجو برای: snp array
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GeneCards (http://bioinfo.weizmann.ac.il/cards/) is an automated, integrated database of human genes, genomic maps, proteins, and diseases, with software that retrieves, consolidates, searches, and displays human genome information [1, 2]. Over the past few years, the system has consistently added new features including sequence accessions, genomic locations, cDNA assemblies, orthologies, medic...
SNP sites are generally discovered by sequencing regions of the human genome in a limited number of individuals. This may leave SNP sites present in the region, but containing rare mutant nucleotides, undetected. Consequently, estimates of nucleotide diversity obtained from assays of detected SNP sites are biased. In this research we present a statistical model of the SNP discovery process, whi...
There is growing interest in the role of rare variants in multifactorial disease etiology, and increasing evidence that rare variants are associated with complex traits. Single SNP tests are underpowered in rare variant association analyses, so locus-based tests must be used. Quality scores at both the SNP and genotype level are available for sequencing data and they are rarely accounted for. A...
High-Density Oligonucleotide SNP Arrays Rameen Beroukhim, Ming Lin, Yuhyun Park, Ke Hao, Xiaojun Zhao, Levi A. Garraway, Edward A. Fox, Ephraim P. Hochberg, Ingo K. Mellinghoff, Matthias D. Hofer, Aurelien Descazeaud, Mark A. Rubin, Matthew Meyerson, Wing Hung Wong, William R. Sellers, Cheng Li doi:10.1371/journal.pcbi.0020041 In PLoS Computational Biology, volume 2, issue 5: In the subsection ...
1.1 Simple derivation of GBLUP Models for genomic selection are abundant. However, most of them rely (yet not all; [1] ) in a hierarchical formulation in which SNP markers (or haplotypes) have additive effect on the trait of interest [2]. We will focus here in models including biallelic SNP markers. Thus, n markers will have n effects, a1 ... an. Although markers have 2 alleles, a single effect...
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