نتایج جستجو برای: transcriptome

تعداد نتایج: 36537  

Journal: :The New phytologist 2008
M R Broadley P J White J P Hammond N S Graham H C Bowen Z F Emmerson R G Fray P P M Iannetta J W McNicol S T May

* The transcriptome of an organism is its set of gene transcripts (mRNAs) at a defined spatial and temporal locus. Because gene expression is affected markedly by environmental and developmental perturbations, it is widely assumed that transcriptome divergence among taxa represents adaptive phenotypic selection. This assumption has been challenged by neutral theories which propose that stochast...

2014
Jacqueline D. Farrell Stephen Byrne Cristiana Paina Torben Asp

BACKGROUND Perennial ryegrass is a highly heterozygous outbreeding grass species used for turf and forage production. Heterozygosity can affect de-Bruijn graph assembly making de novo transcriptome assembly of species such as perennial ryegrass challenging. Creating a reference transcriptome from a homozygous perennial ryegrass genotype can circumvent the challenge of heterozygosity. The goals ...

Journal: :Genome Biology 2001

Journal: :Clinical Cancer Research 2007

Journal: :Journal of Dairy & Veterinary Sciences 2018

2015
Norichika Ogata Toshinori Kozaki Takeshi Yokoyama Tamako Hata Kikuo Iwabuchi Erjun Ling

Cells must coordinate adjustments in genome expression to accommodate changes in their environment. We hypothesized that the amount of transcriptome change is proportional to the amount of environmental change. To capture the effects of environmental changes on the transcriptome, we compared transcriptome diversities (defined as the Shannon entropy of frequency distribution) of silkworm fat-bod...

2012
Huixia Du Zhenmin Bao Rui Hou Shan Wang Hailin Su Jingjing Yan Meilin Tian Yan Li Wen Wei Wei Lu Xiaoli Hu Shi Wang Jingjie Hu

BACKGROUND Sea cucumbers are a special group of marine invertebrates. They occupy a taxonomic position that is believed to be important for understanding the origin and evolution of deuterostomes. Some of them such as Apostichopus japonicus represent commercially important aquaculture species in Asian countries. Many efforts have been devoted to increasing the number of expressed sequence tags ...

2015
In Seok Yang Sangwoo Kim

RNA is a polymeric molecule implicated in various biological processes, such as the coding, decoding, regulation, and expression of genes. Numerous studies have examined RNA features using whole transcriptome sequencing (RNA-seq) approaches. RNA-seq is a powerful technique for characterizing and quantifying the transcriptome and accelerates the development of bioinformatics software. In this re...

2012
Yinü Li Guozeng Wang Jian Tian Huifen Liu Huipeng Yang Yongzhu Yi Jinhui Wang Xiaofeng Shi Feng Jiang Bin Yao Zhifang Zhang

The domestic silkworm, Bombyx mori, is a model insect with important economic value for silk production that also acts as a bioreactor for biomaterial production. The functional complexity of the silkworm transcriptome has not yet been fully elucidated, although genomic sequencing and other tools have been widely used in its study. We explored the transcriptome of silkworm at different developm...

Journal: :Journal of applied research in plant sciences 2022

Transcriptome analysis is a useful method for identification and understanding genes. Finding genes that are differentially expressed between conditions crucial aspect of transcriptomics. The discovery RNA seq has been revolutionized next-generation sequencing technology. fact does not requires gene probes provides precise measure expression over much wider range proved its credibility other co...

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