نتایج جستجو برای: basal core promoter

تعداد نتایج: 393780  

2011
A Mohamadkhani G Montazeri H Poustchi

Hepadnaviruses employ an unusual strategy for the production of enormous number of virions during replication which makes rapid and substantial genetic sequence changes and alterations. The pathogenesis and clearance of hepatitis B virus (HBV) infection are engaged by the selection and expression of viral mutants during virus-host interactions. Mutations in regulatory regions such as the basal ...

Journal: :Biological chemistry 2003
Michaela Angermayr Kerstin Schwerdffeger Wolfhard Bandlow

RIO1 is an essential gene that encodes a protein serine kinase and is transcribed constitutively at a very low level. Transcriptional activation of RIO1 dispenses with a canonical TATA box as well as with classical transactivators or specific DNA-binding factors. Instead, a dG-dC-rich sequence element, that is located 40 to 48 bp upstream the single site of mRNA initiation, is essential and pre...

Journal: :Genes & development 2014
Adi Kedmi Yonathan Zehavi Yair Glick Yaron Orenstein Diana Ideses Chaim Wachtel Tirza Doniger Hiba Waldman Ben-Asher Nemone Muster James Thompson Scott Anderson Dorit Avrahami John R Yates Ron Shamir Doron Gerber Tamar Juven-Gershon

Transcription of protein-coding genes is highly dependent on the RNA polymerase II core promoter. Core promoters, generally defined as the regions that direct transcription initiation, consist of functional core promoter motifs (such as the TATA-box, initiator [Inr], and downstream core promoter element [DPE]) that confer specific properties to the core promoter. The known basal transcription f...

Journal: :Journal of virology 1995
C J Krebs M T McAvoy G Kumar

The glial cell specificity of the human papovavirus JC (JCV), an etiologic agent for progressive multifocal leukoencephalopathy, is thought to be due to the presence of both positive and negative regulatory elements upstream of the TATA region within the JCV promoter. Here we report that the JCV minimal core promoter, containing only the TATA box and an 8-bp poly(T) region immediately upstream,...

Journal: :Bioinformatics 2005
Naum I. Gershenzon Ilya P. Ioshikhes

MOTIVATION The subject of our paper is bioinformatics analysis of the distinguishing features of human promoter DNA sequences, in particular of synergetic combinations of core promoter elements therein. We suppose that specific scenarios of transcription initiation are essentially related to various particular implementations of the interaction of basal transcription machinery with promoter DNA...

Journal: :Genome research 2011
Simon J van Heeringen Waseem Akhtar Ulrike G Jacobi Robert C Akkers Yutaka Suzuki Gert Jan C Veenstra

Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists; however for most of these motifs, the distribution across species is unknown. Here we report on the comparison of human and amphibian promoter sequences. We have used oligo-capping in combination with deep sequencing to determine transcription start ...

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