نتایج جستجو برای: genomic linkage

تعداد نتایج: 165247  

Journal: :Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2012
Jeffrey L Feder Richard Gejji Sam Yeaman Patrik Nosil

Theoretical models addressing genome-wide patterns of divergence during speciation are needed to help us understand the evolutionary processes generating empirical patterns. Here, we examine a critical issue concerning speciation-with-gene flow: to what degree does physical linkage (r < 0.5) of new mutations to already diverged genes aid the build-up of genomic islands of differentiation? We us...

2014
T. Meuwissen A. Sonesson J. Ødegård

In the literature an abundance of genomic relationship matrices have been described which mainly differ in the age of the relationships that they trace. Marker based relationship matrices (G) generally trace very old relationships, since the marker mutations occurred. Pedigree (A) and linkage analysis relationship matrices (GLA) trace relationships since pedigree recording started, i.e. since t...

Journal: :Journal of animal science 2013
J R Thomasen A C Sørensen G Su P Madsen M S Lund B Guldbrandtsen

The main purpose of this study was to evaluate whether the population structure in Danish Jersey (DJ) known from the history of the breed also is reflected in its genomic structure. This is done by comparing the linkage disequilibrium and persistence of phase for subgroups of Jersey animals with high proportions of Danish (DNK) or United States (USJ) origin. Furthermore, it is investigated whet...

Journal: :journal of advanced medical sciences and applied technologies 0
farzane arianfar department of medical genetics, shiraz university of medical sciences, shiraz, iran hassan dastsooz department of medical genetics, shiraz university of medical sciences, shiraz, iran nazanin vahedi department of medical genetics, shiraz university of medical sciences, shiraz, iran zeinab fadaei department of medical genetics, shiraz university of medical sciences, shiraz, iran mohammad hadi imanieh shiraz transplant research center, gastroenterohepatology research center, namazi teaching hospital, shiraz university of medical sciences, shiraz, iran seyed mohsen dehghani

background: wilson disease (wd) is caused by numerous pathogenic mutations of the atp7b gene. there are several mutation screening methods that can be used for the diagnosis and carrier detection of wd, however such methods are costly and time-consuming. therefore, other diagnostic methods should be used for urgent situations such as prenatal diagnosis. objective: to report common polymorphisms...

حافظیان, حسن, صاحب علم, حمید, فرهادی, ایوب, قلی زاده, محسن,

The aim of this study was to compare different methods of Bayesian (parameteric) approaches for predicting genomic breeding values of traits with different genetic architecture in different distribution of gene effects, number of  quantitative traits loci, heritability and the number of reference population using simulated data. A genome contained 3 chromosomes, with the length of 100 cM and 10...

2014
Hiroyasu Kitashiba Feng Li Hideki Hirakawa Takahiro Kawanabe Zhongwei Zou Yoichi Hasegawa Kaoru Tonosaki Sachiko Shirasawa Aki Fukushima Shuji Yokoi Yoshihito Takahata Tomohiro Kakizaki Masahiko Ishida Shunsuke Okamoto Koji Sakamoto Kenta Shirasawa Satoshi Tabata Takeshi Nishio

Radish (Raphanus sativus L., n = 9) is one of the major vegetables in Asia. Since the genomes of Brassica and related species including radish underwent genome rearrangement, it is quite difficult to perform functional analysis based on the reported genomic sequence of Brassica rapa. Therefore, we performed genome sequencing of radish. Short reads of genomic sequences of 191.1 Gb were obtained ...

Journal: :BMC medical informatics and decision making 2015
Wen-Jie Lu Yoshiji Yamada Jun Sakuma

OBJECTIVE Developed sequencing techniques are yielding large-scale genomic data at low cost. A genome-wide association study (GWAS) targeting genetic variations that are significantly associated with a particular disease offers great potential for medical improvement. However, subjects who volunteer their genomic data expose themselves to the risk of privacy invasion; these privacy concerns pre...

2017
Qifan Zeng Qiang Fu Yun Li Geoff Waldbieser Brian Bosworth Shikai Liu Yujia Yang Lisui Bao Zihao Yuan Ning Li Zhanjiang Liu

Single nucleotide polymorphisms (SNPs) are capable of providing the highest level of genome coverage for genomic and genetic analysis because of their abundance and relatively even distribution in the genome. Such a capacity, however, cannot be achieved without an efficient genotyping platform such as SNP arrays. In this work, we developed a high-density SNP array with 690,662 unique SNPs (here...

2017
José de Ribamar da Silva Nunes Shikai Liu Fábio Pértille Caio Augusto Perazza Priscilla Marqui Schmidt Villela Vera Maria Fonseca de Almeida-Val Alexandre Wagner Silva Hilsdorf Zhanjiang Liu Luiz Lehmann Coutinho

Colossoma macropomum, or tambaqui, is the largest native Characiform species found in the Amazon and Orinoco river basins, yet few resources for genetic studies and the genetic improvement of tambaqui exist. In this study, we identified a large number of single-nucleotide polymorphisms (SNPs) for tambaqui and constructed a high-resolution genetic linkage map from a full-sib family of 124 indivi...

Journal: :Genetics 2007
S M Rogers N Isabel L Bernatchez

Elucidating the genetic architecture of population divergence may reveal the evolution of reproductive barriers and the genomic regions implicated in the process. We assembled genetic linkage maps for the dwarf and Normal lake whitefish species complex and their hybrids. A total of 877 AFLP loci and 30 microsatellites were positioned. The homology of mapped loci between families supported the e...

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