We study the convergence rates of neighbor joining and several new phylogenetic reconstruction methods on families of trees of bounded diameter. Our study presents theoretically obtained convergence rates, as well as an empirical study based upon simulation of evolution on random birth-death trees. We find that the new phylogenetic methods offer an advantage over the neighbor joining method, ex...

T hepolice profession hasmuch to gain by recognizing its kinship with a broad range of regulatory professions. Law-enforcement agencies, security and intelligence organizations, and social regulatory agencies all exist primarily to protect society from a variety of harms. Such harms include crime, pollution, occupational hazards, transportation hazards, corruption, discrimination, various forms...

The HASTELLOY® and HAYNES® alloys are known for their good weldability, which is defined as the ability of a material to be welded and to perform satisfactorily in the imposed service environment. The service performance of the welded component should be given the utmost importance when determining a suitable weld process or procedure. If proper welding techniques and procedures are followed, h...

In the graph database literature the term “join” does not refer to an operator used to merge two graphs. In particular, a counterpart of the relational join is not present in existing graph query languages, and consequently no efficient algorithms have been developed for this operator. This paper provides two main contributions. First, we define a binary graph join operator that acts on the ver...

The robustness (sensitivity to violation of assumptions) of the maximum-likelihood and neighbor-joining methods was examined using simulation. Maximum likelihood and neighbor joining were implemented with Jukes-Cantor, Kimura, and gamma models of DNA substitution. Simulations were performed in which the assumptions of the methods were violated to varying degrees on three model four-taxon trees....

The neighbour-joining method reconstructs phylogenies by iteratively joining pairs of nodes until a single node remains. The criterion for which pair of nodes to merge is based on both the distance between the pair and the average distance to the rest of the nodes. In this paper, we present a new search strategy for the optimisation criteria used for selecting the next pair to merge and we show...