Developmental differences between species commonly result from changes in the tissue-specific expression of genes. Clustering algorithms are a powerful means to detect coexpression across tissues in single species but are not often applied to multidimensional data sets, such as gene expression across tissues in multiple species. As next-generation sequencing approaches enable interspecific anal...

Glandular trichomes of many plant species synthesize and secrete a variety of phytochemicals that play an important protective role against pathogens and pests. Acyl sugars, in particular, are powerful natural insecticides. We demonstrated the existence of the α-ketoacid elongation (αKAE) pathway, an alternative to the fatty acid synthase (FAS) pathway, for the extension of carbon chains of acy...

Nod-like receptors (NLRs) are nucleotide-binding domain and leucine-rich repeats containing proteins that are important in plant resistance signaling. Many of the known pathogen resistance (R) genes in plants are NLRs and they can recognize pathogen molecules directly or indirectly. As such, divergence and copy number variants at these genes are found to be high between species. Within populati...

Developmental differences between species commonly result from changes in the tissue-specific expression of genes. Clustering algorithms are a powerful means to detect coexpression across tissues in single species but are not often applied to multidimensional data sets, such as gene expression across tissues in multiple species. As next-generation sequencing approaches enable interspecific anal...

Vegetables are critical for human health as they are a source of multiple vitamins including vitamin E (VTE). In plants, the synthesis of VTE compounds, tocopherol and tocotrienol, derives from precursors of the shikimate and methylerythritol phosphate pathways. Quantitative trait loci (QTL) for α-tocopherol content in ripe fruit have previously been determined in an Solanum pennellii tomato in...

Thicker leaves allow plants to grow in water-limited conditions. However, our understanding of the genetic underpinnings of this highly functional leaf shape trait is poor. We used a custom-built confocal profilometer to directly measure leaf thickness in a set of introgression lines (ILs) derived from the desert tomato Solanum pennellii and identified quantitative trait loci. We report evidenc...

Understanding the genetic basis for changes in transcriptional regulation is an important aspect of understanding phenotypic evolution. Using interspecific introgression lines, we infer the mechanisms of divergence in genome-wide patterns of gene expression between the nightshades Solanum pennellii and S. lycopersicum (domesticated tomato). We find that cis- and trans-regulatory changes have ha...

Fresh tomato fruit flavour is the sum of the interaction between sugars, acids, and a set of approximately 30 volatile compounds synthesized from a diverse set of precursors, including amino acids, lipids, and carotenoids. Some of these volatiles impart desirable qualities while others are negatively perceived. As a first step to identify the genes responsible for the synthesis of flavour-relat...

Several studies have been conducted on resistance sources to improve the genetic resistance of farm-grown tomatoes to arthropod pests, including phytophagous mites. In the present study, we evaluate the behavior of the two-spotted spider mite on different cherry tomato accessions to identify possible sources of resistance (repellent effect) to this pest. Sixty-four accessions of cherry tomatoes...

Unilateral incompatibility (UI) is a prezygotic reproductive barrier in plants that prevents fertilization by foreign (interspecific) pollen through the inhibition of pollen tube growth. Incompatibility occurs in one direction only, most often when the female is a self-incompatible species and the male is self-compatible (the "SI x SC rule"). Pistils of the wild tomato relative Solanum lycopers...