I. Ahmad et al. (eds.), Microbes and Microbial Technology: Agricultural and Environmental Applications, DOI 10.1007/978-1-4419-7931-5_2, © Springer Science+Business Media, LLC 2011 Abstract Culture-based methods are important in investigating the microbial ecology of natural and anthropogenically impacted environments, but they are extremely biased in their evaluation of microbial genetic diver...

RECONCILING MICROBIAL SYSTEMATICS & GENOMICS Microorganisms are fantastically diverse, both genetically and phenotypically. The amount and depth of genetic diversity represented among the named microbial species is greater than that represented among the animals and plants combined. If the distinctions and testing in use today could be applied to all microorganisms (even those that cannot be gr...

Microbial communities are at the very basis of life on earth, catalyzing biogeochemical reactions driving global nutrient cycles. However, unlike for plants and animals, microbial diversity is not on the biodiversity-conservation agenda. The latter, however, would imply that microbial diversity is not under any threat by anthropogenic disturbance or climate change. This maybe a misconception ca...

Despite the importance of microbial communities for ecosystem services and human welfare, the relationship between microbial diversity and multiple ecosystem functions and services (that is, multifunctionality) at the global scale has yet to be evaluated. Here we use two independent, large-scale databases with contrasting geographic coverage (from 78 global drylands and from 179 locations acros...

For centuries ecologists have studied how the diversity and functional traits of plant and animal communities vary across biomes. In contrast, we have only just begun exploring similar questions for soil microbial communities despite soil microbes being the dominant engines of biogeochemical cycles and a major pool of living biomass in terrestrial ecosystems. We used metagenomic sequencing to c...

Life in desert soil is marked by episodic pulses of water and nutrients followed by long periods of drought. While the desert flora and fauna flourish after rainfall the response of soil microorganisms remains unclear and understudied. We provide the first systematic study of the role of soil aqueous habitat dynamics in shaping microbial community composition and diversity. Detailed monitoring ...

The microbial diversity in soil ecosystems is higher than in any other microbial ecosystem. The majority of soil microorganisms has not been characterized, because the dominant members have not been readily culturable on standard cultivation media; therefore, the soil ecosystem is a great reservoir for the discovery of novel microbial enzymes and bioactivities. The soil metagenome, the collecti...

The objective of this study was to investigate the changes in soil microbial biomass C, microbial metabolic activity, functional diversity, and metabolic diversity pattern during the restoration process of a pine (Pinus tabulaeformis) plantation. In this study, a chronosequence approach was adopted. Three sites of pine plantations along a restoration chronosequence (12 years old (PF12), 25 year...

Plumb Beach, Brooklyn, New York in USA is an important horseshoe crab breeding and nursery ground that has experienced substantial anthropogenic influence, including pollution, erosion and subsequent restoration. Since little is known about the relationship between sediment microbial communities and juvenile horseshoe crab survival, next generation sequencing was used to characterize and compar...