نتایج جستجو برای: protein data bank

تعداد نتایج: 3499249  

Journal: :Journal of Computer-Aided Molecular Design 2014

2006
Robert Fraser James Stewart Janice Glasgow

This study presents a new algorithm for the accurate determination of the interhelical angle for a pair of alpha helices in a protein. The calculation is fully automated, and uses contact map information to determine the location of the interface region for the pair. The accuracy of the algorithm is tested by comparing the results to angles determined manually by observation in a classic paper....

Journal: :Nucleic acids research 2004
Nicolas Hulo Christian J. A. Sigrist Virginie Le Saux Petra S. Langendijk-Genevaux Lorenza Bordoli Alexandre Gattiker Edouard De Castro Philipp Bucher Amos Bairoch

The PROSITE database consists of a large collection of biologically meaningful signatures that are described as patterns or profiles. Each signature is linked to documentation that provides useful biological information on the protein family, domain or functional site identified by the signature. The PROSITE web page has been redesigned and several tools have been implemented to help the user d...

Journal: :Acta Crystallographica Section A Foundations of Crystallography 2008

2010
Sameer Velankar Younes Alhroub Christoph Best Ségolène Caboche Matthew J. Conroy Jose M. Dana Manuel A. Fernandez Montecelo Glen van Ginkel Adel Golovin Swanand P. Gore Aleksandras Gutmanas Pauline Haslam Pieter M. S. Hendrickx E. Heuson Miriam Hirshberg Melford John Ingvar C. Lagerstedt Saqib Mir Laurence E. Newman Thomas J. Oldfield Ardan Patwardhan Luana Rinaldi Gaurav Sahni Eduardo Sanz-García Sanchayita Sen Robert A. Slowley Antonio Suarez-Uruena Jawahar Swaminathan Martyn F. Symmons Wim F. Vranken Michael E. Wainwright Gerard J. Kleywegt

The Protein Data Bank in Europe (PDBe; pdbe.org) is actively involved in managing the international archive of biomacromolecular structure data as one of the partners in the Worldwide Protein Data Bank (wwPDB; wwpdb.org). PDBe also develops new tools to make structural data more widely and more easily available to the biomedical community. PDBe has developed a browser to access and analyze the ...

Journal: :Acta Crystallographica Section D: Biological Crystallography 2007
Joël Janin Francis Rodier Pinak Chakrabarti Ranjit P. Bahadur

Crystal structures deposited in the Protein Data Bank illustrate the diversity of biological macromolecular recognition: transient interactions in protein-protein and protein-DNA complexes and permanent assemblies in homodimeric proteins. The geometric and physical chemical properties of the macromolecular interfaces that may govern the stability and specificity of recognition are explored in c...

Journal: :Nucleic acids research 2002
John D. Westbrook Zukang Feng Shri Jain T. N. Bhat Narmada Thanki Veerasamy Ravichandran Gary Gilliland Wolfgang Bluhm Helge Weissig Douglas S. Greer Philip E. Bourne Helen M. Berman

The Protein Data Bank (PDB; http://www.pdb.org/) is the single worldwide archive of structural data of biological macromolecules. This paper describes the progress that has been made in validating all data in the PDB archive and in releasing a uniform archive for the community. We have now produced a collection of mmCIF data files for the PDB archive (ftp://beta.rcsb.org/pub/pdb/uniformity/data...

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