نتایج جستجو برای: rare codon

تعداد نتایج: 260293  

Journal: :modares journal of medical sciences: pathobiology 2011
zahra ehsaei jafar salimian shahram nazrian maysam mansouri jafar amani

objective: enterotoxigenic escherichia coli is considered as the most important agent of children diarrhea and mortality in developing countries. this bacterium causes 300-600 thousands of deaths in the children under 5 years of age per year. with difficulties in treatment as well as its wide prevalence, designing an effective vaccine against this microorganism is the objective of world health ...

Journal: :Nucleic Acids Research 2006
J. Ross Buchan Lorna S. Aucott Ian Stansfield

Translation elongation is an accurate and rapid process, dependent upon efficient juxtaposition of tRNAs in the ribosomal A- and P-sites. Here, we sought evidence of A- and P-site tRNA interaction by examining bias in codon pair choice within open reading frames from a range of genomes. Three distinct and marked effects were revealed once codon and dipeptide biases had been subtracted. First, i...

2016
You Wang Chunying Li Md. Rezaul Islam Khan Yushu Wang Yunfeng Ruan Bin Zhao Bo Zhang Xiaopan Ma Kaisi Zhang Xiwen Zhao Guanhao Ye Xizhi Guo Guoyin Feng Lin He Gang Ma

Rare codons generally arrest translation due to rarity of their cognate tRNAs. This property of rare codons can be utilized to regulate protein expression. In this study, a linear relationship was found between expression levels of genes and copy numbers of rare codons inserted within them. Based on this discovery, we constructed a molecular device in Escherichia coli using the rare codon AGG, ...

2015
Maria Camila Montealegre Sabina Leanti La Rosa Jung Hyeob Roh Barrett R. Harvey Barbara E. Murray

UNLABELLED The endocarditis and biofilm-associated pili (Ebp) are important in Enterococcus faecalis pathogenesis, and the pilus tip, EbpA, has been shown to play a major role in pilus biogenesis, biofilm formation, and experimental infections. Based on in silico analyses, we previously predicted that ATT is the EbpA translational start codon, not the ATG codon, 120 bp downstream of ATT, which ...

Journal: :Annals of Oncology 2023

Regorafenib has been shown to improve survival in later lines of treatment metastatic colorectal cancer patients, irrespective RAS status. This study aimed retrospectively assess the efficacy regorafenib relation extended evaluation a multi-center real-world setting. Nine Institution from Central-Southern Italy were involved study. Main inclusion criteria were: availability evaluation, data con...

2014
Fabienne F. V. Chevance Soazig Le Guyon Kelly T. Hughes

We developed a bacterial genetic system based on translation of the his operon leader peptide gene to determine the relative speed at which the ribosome reads single or multiple codons in vivo. Low frequency effects of so-called "silent" codon changes and codon neighbor (context) effects could be measured using this assay. An advantage of this system is that translation speed is unaffected by t...

Journal: :Investigative ophthalmology & visual science 2013
Robert L McKown Ronald W Raab Patricia Kachelries Sara Caldwell Gordon W Laurie

PURPOSE Lacritin is a prosecretory mitogen in tears and, although a tear protein, it promotes basal tearing and lacrimal gland secretion. Since scale up is relevant to its potential use in the treatment of dry eye, we explored various mutagenic strategies to alter the stability, solubility, and translational efficiency of nascent lacritin, and discovered 3' clustering of rare human codons. ME...

Journal: :Mathematical biosciences 1989
C J Michel

With the three-letter alphabet [R,Y,N] (R = purine, Y = pyrimidine, N = R or Y), there are 26 codons (NNN being excluded): RNN,...,NNY (six codons at two unspecified bases N), RRN,...,NYY (12 codons at one unspecified base N), RRR,...,YYY (eight specified codons). A statistical methodology that uses the codon frequency and a reduced centered variable leads to similar results for a codon occurre...

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