The objective of this study was, by means of simulation, to quantify the effect of ignoring individual heterogeneity in Weibull sire frailty models on parameter estimates and to address the consequences for genetic inferences. Three simulation studies were evaluated, which included 3 levels of individual heterogeneity combined with 4 levels of censoring (0, 25, 50, or 75%). Data were simulated ...

Records (2,910) of birth (BWT), weaning (WW), and yearling weight (YW) of F1 calves produced in a top-cross experiment involving Angus, Hereford, Pooled Hereford, Charolais, Limousin, Simmental, Gelbvieh, Maine-Anjou, Chianina, Tarentaise, Shorthorn, and Salers bulls mated to Hereford and Angus cows and records (4,592) of WW on three-breed-cross calves out of 986 F1 females of the same breed cr...

A principal component analysis of the 4×4 sire, maternal, management and environmental (co)variance matrices derived from a multi-trait sire model was conducted to describe variability in four economically important carcass traits. Carcass weight (HCWt), P8 fat (P8), eye muscle area (EMA) and intramuscular fat (IMF) collected from 1144 heifers and steers calves from seven sire breeds: Angus, Be...

Maternal inputs to offspring early in development are initially high but the process of development suggests that ontogenetic shifts in the importance of maternal genetic variation relative to other sources should occur. We investigated additive genetic variance and covariance for direct (animal), sire, and maternal effects on embryonic length (EL), yolk sac volume (YSV), and alevin (after yolk...

The proportion of variance for service sire effect was estimated for three litter size traits (numbers of piglets born, born alive, and weaned) in Czech Large White (89 231 litters) and Czech Landrace (28 320 litters) pigs. Each trait in the first parity was considered as one trait and that trait in the second and subsequent parities was treated as a repeated trait. Consequently, three two-trai...

Parasitic infections by the salmon louse, Lepeophtheirus salmonis (Krøyer), cause huge economic damage in salmon farming in the northern hemisphere, with combined treatment costs and production losses in 2014 having been estimated at US$ 350 million for Norway (annual production 1.25 million tonnes). The control of L. salmonis relies significantly on medicinal treatments, supplemented by non-ph...

A method of storing and retrieving nonzero elements of a large, sparse symmetric matrix using only internal computer storage is presented. An algorithm for applying the recursive or tabular method of calculating the numerator relationship matrix of a large group of animals is given. The algorithm is applicable to inbred and noninbred populations and can be used on sire/dam or sire/maternal gran...

Evaluations that analyze first and later parities as correlated traits were developed separately for calving ease (CE) from over 15 million calving records of Holsteins, Brown Swiss, and Holstein-Brown Swiss crossbreds and for stillbirth (SB) from 7.4 million of the Holstein CE records. Calving ease was measured on a scale of 1 (no difficulty) to 5 (difficult birth); SB status was designated as...

Maximum likelihood methods for the estimation of linkage disequilibrium between biallelic DNA-markers in half-sib families (half-sib method) are developed for single and multifamily situations. Monte Carlo computer simulations were carried out for a variety of scenarios regarding sire genotypes, linkage disequilibrium, recombination fraction, family size, and number of families. A double hetero...