نتایج جستجو برای: throughput nucleotide sequencing

تعداد نتایج: 307622  

A. R. Sirothia D. S. Kale, K. Krishnamurthi M. D. Kothekar P. N. Gholap

Metallothionein (MT) is important because it binds tightly to heavy metals to decrease their toxicity. DNA was isolated from 30 toxic metal exposed and 30 toxic metal unexposed Zebu cows. The amplified metallothionein isoform-2 (MT-2) PCR product (489 bp) was further used for PCR-RFLP and DNA sequencing. MT-2 TaqI PCR-RFLP revealed homozygous genotype (AA) except for the E23 animal (AB). The ge...

Journal: :علوم دامی ایران 0
زینب امیری قنات سامان دانشجوی دکتری اصلاح نژاد دام، بخش مهندسی علوم دامی، دانشکدة کشاورزی، دانشگاه شهید باهنر کرمان، کرمان، ایران و عضو انجمن پژوهشگران جوان، دانشگاه شهید باهنر کرمان علی اسمعیلی زاده کشکوئیه استاد، بخش مهندسی علوم دامی، دانشکدة کشاورزی، دانشگاه شهید باهنر کرمان، کرمان، ایران مسعود اسدی فوزی دانشیار، بخش مهندسی علوم دامی، دانشکدة کشاورزی، دانشگاه شهید باهنر کرمان، کرمان، ایران

in this research, samples were collected from three iranian native dogs and three wolves. whole-genome sequencing for each individual was performed using next-generation sequencing technology. all short reads were aligned to the reference genome using bwa tool. single-nucleotide polymorphisms (snps) and small insertions and deletions (indels) were detected using the genome analysis toolkit (gat...

2015
Byunghan Lee Taesup Moon Sungroh Yoon Tsachy Weissman

Motivation: We consider the correction of errors from nucleotide sequences produced by next-generation sequencing. The error rate in reads has been increasing with the shift of focus of mainstream sequencers from accuracy to throughput. Denoising in high-throughput sequencing is thus becoming a crucial component for boosting the reliability of downstream analyses. Results: Our methodology, name...

Journal: :Viruses 2023

We previously reported a novel rhabdovirus produced from the Spodoptera frugiperda Sf9 cell line, designated as Sf-rhabdovirus X+ since it contained unique accessory gene X. The genome sequence was generated using Sanger sequencing and short-read high-throughput (HTS). In this study, we have used long-read HTS technologies, PacBio’s single-molecule real-time Oxford’s Nanopore RNA direct sequenc...

Journal: :genetics in the 3rd millennium 0
jamali leila mohammad reza , akbari marzieh mohseni kimia , kahrizi hossein najmabadi

cancer, with a high rate of mortalities worldwide, pose a major threat to human health. although family history accounts for at least 5-10% of all cancers, it is conferred to be as a significant risk of developing cancer. recently, application of high speed and low cost high-throughput nucleotide sequencing technologies has provided an opportunity to assess cancer risk in at risk healthy indivi...

Journal: :journal of current ophthalmology 0
رزا میری rosa miri محمدحسین حریرچیان mohammad hossein harirchian عباس تفاخری abbas tafakhori رضا شاه سیاه reza shahsiah

purpose: neuromyelitis opitca (nmo) is an autoimmune disease that relates to deposition of anti-aquaporin-4 (aqp4) igg in the central nervous system (cns). however, called seronegative nmo when patients are negative for aqp4 antibody. nevertheless, nmo is most probably an antibody mediated disease. the aim of this study was to assess the association between seronegative nmo disease and variatio...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2003
Zengmin Li Xiaopeng Bai Hameer Ruparel Sobin Kim Nicholas J Turro Jingyue Ju

DNA sequencing by synthesis during a polymerase reaction using laser-induced fluorescence detection is an approach that has a great potential to increase the throughput and data quality of DNA sequencing. We report the design and synthesis of a photocleavable fluorescent nucleoside triphosphate, one of the essential molecules required for the sequencing-by-synthesis approach. We synthesized thi...

Journal: :BioTechniques. Rapid dispatches 2012
Daniel M Bornman Mark E Hester Jared M Schuetter Manjula D Kasoji Angela Minard-Smith Curt A Barden Scott C Nelson Gene D Godbold Christine H Baker Boyu Yang Jacquelyn E Walther Ivan E Tornes Pearlly S Yan Benjamin Rodriguez Ralf Bundschuh Michael L Dickens Brian A Young Seth A Faith

DNA-based methods for human identification principally rely upon genotyping of short tandem repeat (STR) loci. Electrophoretic-based techniques for variable-length classification of STRs are universally utilized, but are limited in that they have relatively low throughput and do not yield nucleotide sequence information. High-throughput sequencing technology may provide a more powerful instrume...

Journal: :Accounts of chemical research 2010
Jia Guo Lin Yu Nicholas J Turro Jingyue Ju

The Human Genome Project has concluded, but its successful completion has increased, rather than decreased, the need for high-throughput DNA sequencing technologies. The possibility of clinically screening a full genome for an individual's mutations offers tremendous benefits, both for pursuing personalized medicine and for uncovering the genomic contributions to diseases. The Sanger sequencing...

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