We calculate the average hydrodynamic stress on fractal aggregates of spheres using Stokesian dynamics. We find that for fractal aggregates of force-free particles, the stress does not grow as the cube of the radius of gyration, but rather as the number of particles in the aggregate. This behavior is only found for random aggregates of force-free particles held together by hydrodynamic lubricat...

We report microsecond timescale molecular dynamics simulation of the complex formed between Pt(II)-phenanthroline and the 16 N-terminal residues of the Aβ peptide that is implicated in the onset of Alzheimer's disease, along with equivalent simulations of the metal-free peptide. Simulations from a variety of starting points reach equilibrium within 100 ns, as judged by root mean square deviatio...

Small-angle X-ray scattering and nuclear magnetic resonance were used to investigate the structural change of calcium-bound calmodulin (Ca2+/CaM) in solution upon binding to its antagonist, N-(6-aminohexyl)-5-chloro-1-naphthalenesulfonamide (W-7). The radius of gyration was 17.4+/-0.3 A for Ca2+/CaM-W-7 with a molar ratio of 1:5 and 20.3+/-0.7 A for Ca2+/CaM. Comparison of the radius of gyratio...

We experimentally investigated the equilibrium conformation and dynamics of single DNA molecules in slitlike nanochannels. We measured the in-plane radius of gyration (R )), diffusivity (D), and longest relaxation time (τ) of λ-DNA (48.5 kbp) as functions of the slit height using fluorescence microscopy. Our results show that the in-plane radius of gyration increases monotonically with decreasi...

On-line two-angle (15 and 90) light scattering measurements with a gel permeation chromatograph for linear and branched polystyrene in tetrahydrofuran (a good solvent) and in trans-decalin (a theta solvent) were made and compared with data from a multi-angle light scattering detector and literature values. Theoretically, weight-average molecular weight and the radius of gyration Rg can be det...

X-ray diffraction (XRD) technique due to it's strength for providing visualized atomic model of molecules, stands as first in the field of characterization of new synthesized molecules. Here, the analysis of diffraction data on discrete units of new, not yet fairly known structure of molecule $rm C_{52} H_{60} N_4 S_8 Zn_2$ is performed to obtain a quantitative view of the structure of the syst...

We use new algorithms, based on the finite lattice method of series expansion, to extend the enumeration of self-avoiding walks and polygons on the triangular lattice to length 40 and 60, respectively. For self-avoiding walks to length 40 we also calculate series for the metric properties of mean-square end-to-end distance, mean-square radius of gyration and the mean-square distance of a monome...

The slip phenomena in thin polymer films confined by either flat or periodically corrugated surfaces are investigated by molecular dynamics and continuum simulations. For atomically flat surfaces and weak wall-fluid interactions, the shear rate dependence of the slip length has a distinct local minimum which is followed by a rapid increase at higher shear rates. For corrugated surfaces with wav...

We use new algorithms, based on the finite lattice method of series expansion, to extend the enumeration of self-avoiding walks and polygons on the triangular lattice to length 40 and 60, respectively. For self-avoiding walks to length 40 we also calculate series for the metric properties of mean-square end-to-end distance, mean-square radius of gyration and the mean-square distance of a monome...

We have developed an improved algorithm that allows us to enumerate the number of site animals on the square lattice up to size 46. We also calculate the number of lattice trees up to size 44 and the radius of gyration of both lattice animals and trees up to size 42. Analysis of the resulting series yields an improved estimate, λ = 4.062570(8), for the growth constant of lattice animals, and, λ...