Degradation of Amino Acids . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 474 Influence of Methanogens . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 475 Obligately Syntrophic Amino Acid Deamination . . . . . . . 475 Syntrophic Arginine, Threonine, and Lysine Fermentation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 475 Facu...

Four eukaryotic-type protein serine/threonine kinases from Streptomyces coelicolor A3(2) were cloned and sequenced. To explore evolutionary relationships between these and other protein kinases, the distribution of protein serine/threonine kinase genes in prokaryotes was examined with the TFASTA program. Genes of this type were detected in only a few species of prokaryotes and their distributio...

Understanding the effects of environmental factors on microbial communities is critical for microbial ecology, but it remains challenging. In this study, we examined the diversity (alpha diversity) and community compositions (beta diversity) of prokaryotes and fungi in hypersaline sediments and salinized soils from northern China. Environmental variables were highly correlated, but they differe...

Vitamin B12, cobalamin, is a cobalt-containing ring-contracted modified tetrapyrrole that represents one of the most complex small molecules made by nature. In prokaryotes it utilised as cofactor, coenzyme, light sensor and gene regulator yet has restricted role in assisting only two enzymes within specific eukaryotes including mammals. This deployment disparity reflected another unique attribu...

Intertidal photosynthetic microbial mats from the Wadden Sea island Schiermonnikoog were examined for microscale (millimetre) spatial distributions of viruses, prokaryotes and oxygenic photoautotrophs (filamentous cyanobacteria and benthic diatoms) at different times of the year. Abundances of viruses and prokaryotes were among the highest found in benthic systems (0.05-5.43 × 10(10) viruses g(...

The realization that prokaryotes naturally and frequently disperse genes across steep taxonomic boundaries via lateral gene transfer (LGT) gave wings to the idea that eukaryotes might do the same. Eukaryotes do acquire genes from mitochondria and plastids and they do transfer genes during the process of secondary endosymbiosis, the spread of plastids via eukaryotic algal endosymbionts. From tho...

Larralde, M., (2022). Pyrodigal: Python bindings and interface to Prodigal, an efficient method for gene prediction in prokaryotes. Journal of Open Source Software, 7(72), 4296, https://doi.org/10.21105/joss.04296

After our analysis of the distribution of predicted intrinsic curvature along all available complete prokaryotic genomes, the genomes were divided into two groups. Curvature distribution in all prokaryotes of the first group indicated a substantial fraction of promoters characterized by intrinsic DNA curvature located within or upstream of the promoter region. We did not find this peculiar DNA ...

The base sequences of the nucleic acids corresponding to ten proteins (aconitase, alcohol dehydrogenase, enolase, fumarase, isocitrate dehydrogenase, lactate dehydrogenase, phosphofructokinase, phosphoglycerate mutase, pyruvate kinase and succinate dehydrogenase) belonging to a total of 154 species, ranging from prokaryotes to vertebrates, were compared with the base sequences of oligoribotides...