Most molecular analyses, including phylogenetic inference, are based on sequence alignments. We present an algorithm that estimates relatedness between biomolecules without the requirement of sequence alignment by using a protein frequency matrix that is reduced by singular value decomposition (SVD), in a latent semantic index information retrieval system. Two databases were used: one with 832 ...

motivated by an arens regularity problem, we introduce the concepts of matrix banach space and matrix banach algebra. the notion of matrix normed space in the sense of ruan is a special case of our matrix normed system. a matrix banach algebra is a matrix banach space with a completely contractive multiplication. we study the structure of matrix banach spaces and matrix banach algebras. then we...

Let G be a strongly connected, weighted directed graph. We define a product distance η(i, j) for pairs i, j of vertices and form the corresponding product distance matrix. We obtain a formula for the determinant and the inverse of the product distance matrix. The edge orientation matrix of a directed tree is defined and a formula for its determinant and its inverse, when it exists, is obtained....