Quantification of statistical significance is essential for the interpretation of protein structural similarity. To address this, a random model for protein structure comparison was developed. Novelty of the model is threefold. First, a sample of random structure comparisons is restricted to molecules of the same size and shape as the superposition of interest. Second, careful selection of the ...

High b-value q-space diffusion MRS was used to study the diffusion characteristics of formalin-fixed swine optic and sciatic nerves over a large range of diffusion times (3.7-99.3 ms). The very short diffusion time range was studied with a 1 ms resolution. The displacement distribution profiles obtained were fitted to a bi-Gaussian function, and structural parameters were extracted from the q-s...

The fuzzy logical model of perception (FLMP; Massaro, 1998) has been extremely successful at describing performance across a wide range of ecological domains as well as for a broad spectrum of individuals. An important issue is whether this descriptive ability is theoretically informative or whether it simply reflects the model's ability to describe a wider range of possible outcomes. Previous ...

For an increasing fraction of proteins whose structures are being studied, sequence homology to known structures permits building of low resolution structural models. It is demonstrated that dipolar couplings, measured in a liquid crystalline medium, not only can validate such structural models, but also refine them. Here, experimental 1H-15N, 1Halpha-13Calpha, and 13C'-13Calpha dipolar couplin...

This article introduces the T-RMSD web server (tree-based on root-mean-square deviation), a service allowing the online computation of structure-based protein classification. It has been developed to address the relation between structural and functional similarity in proteins, and it allows a fine-grained structural clustering of a given protein family or group of structurally related proteins...

The MONSSTER (MOdeling of New Structures from Secondary and TEritary Restraints) method for folding of proteins using a small number of long-distance restraints (which can be up to seven times less than the total number of residues) and some knowledge of the secondary structure of regular fragments is described. The method employs a high-coordination lattice representation of the protein chain ...

This article introduces the T-RMSD web server (tree-based on root-mean-square deviation), a service allowing the online computation of structure-based protein classification. It has been developed to address the relation between structural and functional similarity in proteins, and it allows a fine-grained structural clustering of a given protein family or group of structurally related proteins...

The Bowen ratio-energy balance (BREB) is a micrometeorological method often used to estimate latent heat flux because of its simplicity, robustness, and cost. Estimates of latent heat flux have compared favorably with other methods in several studies, but other studies have been less certain, especially when there was sensible heat advection. We compared the latent heat flux of irrigated alfalf...

Understanding the relationships between climatic variables and soil physical and chemical properties with crop yields on large scales is critical for evaluating crop productivity to make better assessments of local and regional food security, policy, land and water resource allocation, and management decisions. In this study, ordinary least squares (OLS) regression models were developed to pred...