Haploid cells are increasingly used for screening of complex pathways in animal genomes. Hemizygous mutations introduced through viral insertional mutagenesis can be directly selected for phenotypic changes. Here we present HaSAPPy a tool for analysing sequencing datasets of screens using insertional mutations in large pools of haploid cells. Candidate gene prediction is implemented through ide...

To investigate mechanisms and phenotypic effects of insertional mutagenesis by gammaretroviruses, we have developed mouse lines containing a single Akv 1-99 long terminal repeat (LTR) and a floxed PGK/Tn5 neomycin cassette at the Nras proto-oncogene at positions previously identified as viral integration sites in Akv 1-99 induced tumors. The insert did not compromise the embryonic development, ...

hydroponic experiments were performed to exam the dynamic change of endogenous proline in rice seedlings exposed to potassium chromate chromium (vi) or chromium nitrate chromium (iii). although accumulation of both chromium species in rice seedlings was obvious, more chromium was detected in plant tissues of rice seedlings exposed to chromium (iii) than those in chromium (vi), majority being in...

iranian cave barb (iranocypris typhlops, bruun and kaiser, 1944)is one of thevery rareandendemicspeciesof iran. its distributionrangeislimitedina habitat that causes some problems for its conservation. thisuniquehabitatfaces somenatural and humanthreatsand the habitatdestructionmeansthe extinctionof the species. based on, habitat selection for translocation of the species is an important object...

Identification of numerous mechanisms resistance to colistin and other antibiotics is possible using whole genome sequencing. Objectives. To assess the molecular-genetic polymyxins groups in nosocomial Klebsiella pneumoniae strains. Material methods. For 13 multidrug- extensively drug-resistant K.pneumoniae strains semiconductor sequencing was performed Ion PGM System genomic sequencer (Thermo ...

Retroviral insertional mutagenesis preferentially identifies oncogenes rather than tumor suppressor (TS) genes, presumably because a single retroviral-induced mutation is sufficient to activate an oncogene and initiate a tumor, whereas two mutations are needed to inactivate a TS gene. Here we show that TS genes can be identified by insertional mutagenesis when the screens are performed in Blm-d...

Rice, Oryza sativa L., is one of the most important crops in the world. With the rising world population, feeding people in a more sustainable and environmentally friendly way becomes increasingly important. Therefore, the rice research community needs to share resources to better understand the functions of rice genes that are the foundation for future agricultural biotechnology development, a...

Insertional mutagenesis has been used as a functional forward genetics screen for the identification of novel genes involved in the pathogenesis of human cancers. Different insertional mutagens have been successfully used to reveal new cancer genes. For example, retroviruses are integrating viruses with the capacity to induce the deregulation of genes in the neighborhood of the insertion site. ...