We propose two approaches for determining the native basins in off-lattice models of proteins. The first of them is based on exploring the saddle points on selected trajectories emerging from the native state. In the second approach, the basin size can be determined by monitoring random distortions in the shape of the protein around the native state. Both techniques yield the similar results. A...

Abstract. In this paper, a Cascaded Lattice Boltzmann Method with second order slip boundary conditions is developed to study gas flows in a microchannel in the slip and transition flow regimes with a wide range of Knudsen numbers. For the first time the effect of wall confinement is considered on the effective mean free path of the gas molecules using a function with nonconstant Bosanquet para...