نتایج جستجو برای: ncrna

تعداد نتایج: 970  

2009
Robert K. Bradley Andrew V. Uzilov Mitchell E. Skinner Yuri R. Bendaña Lars Barquist Ian Holmes

We performed benchmarks of phylogenetic grammar-based ncRNA gene prediction, experimenting with eight different models of structural evolution and two different programs for genome alignment. We evaluated our models using alignments of twelve Drosophila genomes. We find that ncRNA prediction performance can vary greatly between different gene predictors and subfamilies of ncRNA gene. Our estima...

2017
Camelia Quek Shayne A. Bellingham Chol-Hee Jung Benjamin J. Scicluna Mitch C. Shambrook Robyn A. Sharples Lesley Cheng Andrew F. Hill

Small non-coding RNAs (ncRNA), including microRNAs (miRNA), enclosed in exosomes are being utilised for biomarker discovery in disease. Two common exosome isolation methods involve differential ultracentrifugation or differential ultracentrifugation coupled with Optiprep gradient fractionation. Generally, the incorporation of an Optiprep gradient provides better separation and increased purity ...

2011
Florent Hubé Guillaume Velasco Jérôme Rollin Denis Furling Claire Francastel

The steroid receptor RNA activator (SRA) has the unusual property to function as both a non-coding RNA (ncRNA) and a protein SRAP. SRA ncRNA is known to increase the activity of a range of nuclear receptors as well as the master regulator of muscle differentiation MyoD. The contribution of SRA to either a ncRNA or a protein is influenced by alternative splicing of the first intron, the retentio...

Journal: :Cold Spring Harbor symposia on quantitative biology 2006
M J Dye N Gromak D Haussecker S West N J Proudfoot

In the past few years, especially since the discovery of RNA interference (RNAi), our understanding of the role of RNA in gene expression has undergone a significant transformation. This change has been brought about by growing evidence that RNA is more complex and transcription more promiscuous than has previously been thought. Many of the new transcripts are of so-called noncoding RNA (ncRNA)...

Journal: :Regulatory toxicology and pharmacology : RTP 2016
Achim Aigner Roland Buesen Tim Gant Nigel Gooderham Helmut Greim Jörg Hackermüller Bruno Hubesch Madeleine Laffont Emma Marczylo Gunter Meister Jay S Petrick Reza J Rasoulpour Ursula G Sauer Kerstin Schmidt Hervé Seitz Frank Slack Tokuo Sukata Saskia M van der Vies Jan Verhaert Kenneth W Witwer Alan Poole

The European Centre for the Ecotoxicology and Toxicology of Chemicals (ECETOC) organised a workshop to discuss the state-of-the-art research on noncoding RNAs (ncRNAs) as biomarkers in regulatory toxicology and as analytical and therapeutic agents. There was agreement that ncRNA expression profiling data requires careful evaluation to determine the utility of specific ncRNAs as biomarkers. To a...

2013
Cheng Yuan Yanni Sun

The number of transcriptomic sequencing projects of various non-model organisms is still accumulating rapidly. As non-coding RNAs (ncRNAs) are highly abundant in living organism and play important roles in many biological processes, identifying fragmentary members of ncRNAs in small RNA-seq data is an important step in post-NGS analysis. However, the state-of-the-art ncRNA search tools are not ...

Journal: :Cancer Research 2021

Abstract The roles of intronic miRNAs and their functional interaction with host coding genes represent a topic that is poorly explored. study by Kwok colleagues in this issue Cancer Research presents solid evidence the FTX locus at chromosome Xq13.2 contains multiple noncoding RNAs (ncRNA) coordinated expression concordant effects colorectal cancer cells. long ncRNA, FTX, its miRNAs, miR-374a,...

2015
Shanmugam Anandakumar Saravanan Vijayakumar Nagarajan Arumugam M Michael Gromiha

UNLABELLED Mammalian Mitochondrial ncRNA is a web-based database, which provides specific information on non-coding RNA in mammals. This database includes easy searching, comparing with BLAST and retrieving information on predicted structure and its function about mammalian ncRNAs. AVAILABILITY The database is available for free at http://www.iitm.ac.in/bioinfo/mmndb/.

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