Tests for correlations between sample size and taxonomic relative abundance are commonly used in zooarchaeological analyses to determine whether observed trends in relative abundance might simply be the result of sampling error. Monte Carlo simulations designed to evaluate the utility of this method indicate that it is inadequate as a means of detecting errors resulting from the incorporation o...

Accurate estimation of microbial community composition based on metagenomic sequencing data is fundamental for subsequent metagenomics analysis. Prevalent estimation methods are mainly based on directly summarizing alignment results or its variants; often result in biased and/or unstable estimates. We have developed a unified probabilistic framework (named GRAMMy) by explicitly modeling read as...

Antarctic krill Euphausia superba is a predominant species in the Southern Ocean, it is very sensitive to climate change, and it supports large stocks of fishes, seabirds, seals and whales in Antarctic marine ecosystems. Modern krill stocks have been estimated directly by net hauls and acoustic surveys; the historical krill density especially the long-term one in the Southern Ocean, however, is...

MOTIVATION Labeling techniques are being used increasingly to estimate relative protein abundances in quantitative proteomic studies. These techniques require the accurate measurement of correspondingly labeled peptide peak intensities to produce high-quality estimates of differential expression ratios. In mass spectrometers with counting detectors, the measurement noise varies with intensity a...

Nutrient enrichment in water and sediments due to excessive anthropogenic activities in recent years has caused excessive algal growth in the Caspian Sea. The current study was conducted to determine the abundance of phytoplankton community, the dominant species and chlorophyll-a [Chl-a] concentration during algal blooms in the Iranian coastal waters of Caspian Sea through four seasons from 201...