Homogeneous DNA polymerase (“reverse transcriptase”) from avian myeloblastosis virus was assayed for exodeoxyribonuclease activity. The substrates were defined template. initiator complexes in which different radioactive nucleotides were present at the 3’-OH termini of the initiator. Even when the number of molecules of enzyme was equal to the number of initiator termini, there was no significa...

Paramyxovirinae are a large group of viruses that includes measles virus and parainfluenza viruses. The viral Phosphoprotein (P) plays a central role in viral replication. It is composed of a highly variable, disordered N-terminus and a conserved C-terminus. A second viral protein alternatively expressed, the V protein, also contains the N-terminus of P, fused to a zinc finger. We suspected tha...

Almost all regulatory processes in biology ultimately lead to or originate from modifications of protein function. However, it is unclear to which extent each mechanism of regulation actually affects proteins and thus phenotypes. We assessed the extent of N-terminal protein truncation in a global analysis of N-terminomics data and find that most proteins have N-terminally truncated proteoforms....

To track the processing of damaged DNA double-strand break (DSB) ends in vivo, a method was devised for quantitative measurement of 3'-phosphoglycolate (PG) termini on DSBs induced by the non-protein chromophore of neocarzinostatin (NCS-C) in the human Alu repeat. Following exposure of cells to NCS-C, DNA was isolated, and labile lesions were chemically stabilized. All 3'-phosphate and 3'-hydro...

At least three building blocks are responsible for the molecular basis of the modulation of electron transfer in nitric oxide synthase (NOS) isoforms: the calmodulin-binding sequence, the C-terminal extension, and the autoregulatory loop in the reductase domain. We have attempted to impart the control conferred by the C termini of NOS to cytochrome P450 oxidoreductase (CYPOR), which contains no...

Nucleic acid conjugates are promising drugs for treating gene-related diseases. Conjugating specific units like lipids, cell-penetrating peptides, polymers, antibodies, and aptamers either at the 3'- or 5'-termini of a siRNA duplex molecule has resulted in plethora bioconjugates with improved stabilities bloodstream better pharmacokinetic values than unmodified siRNAs. In this sense, lipid-siRN...

Homogeneous DNA polymerase (“reverse transcriptase”) from avian myeloblastosis virus was assayed for exodeoxyribonuclease activity. The substrates were defined template. initiator complexes in which different radioactive nucleotides were present at the 3’-OH termini of the initiator. Even when the number of molecules of enzyme was equal to the number of initiator termini, there was no significa...

DNA dependent protein kinase (DNA-PK) plays a central role in the non-homologous end-joining pathway of DNA double strand break repair. Its catalytic subunit (DNA-PK(CS)) functions as a serine/threonine protein kinase. We show that DNA-PK forms a stable complex at DNA termini that blocks the action of exonucleases and ligases. The DNA termini become accessible after autophosphorylation of DNA-P...

Collagen model peptides (CMPs) consisting of proline-(2S,4R)-hydroxyproline-glycine (POG) repeats have provided a breadth knowledge the triple helical structure collagen, most abundant protein in mammals. Predictive tools for helix stability have, however, lagged behind since effect CMPs with different frames ([POG]n, [OGP]n, or [GPO]n) and capped uncapped termini so far been underestimated. He...