Blastocystis spp. are the most prevalent eukaryotic microbes found in the intestinal tract of humans. Here we present an in-depth investigation of lateral gene transfer (LGT) in the genome of Blastocystis sp. subtype 1. Using rigorous phylogeny-based methods and strict validation criteria, we show that ∼2.5% of the genes of this organism were recently acquired by LGT. We identify LGTs both from...

solver We extend the parallel SSOR procedure for the eecient preconditioning of modern Krylov subspace solvers 1], recently introduced in 2] towards higher order, quantum-improved discretization schemes 3] for lattice quantum chromodynamics 4]. 1. Solving linear systems in LGT. Lattice gauge theory (LGT) deals with the controlled numerical evaluation of gauge theories like quantum chromodynamic...

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Genetic recombinants that resulted from lateral gene transfer (LGT) have been detected in sexually transmitted disease isolates of Chlamydia trachomatis, but a mechanism for LGT in C. trachomatis has not been described. We describe here a system that readily detects C. trachomatis LGT in vitro and that may facilitate discovery of its mechanisms. Host cells were simultaneously infected in the ab...

Until recently, phylogenetic analyses of Archaea have mainly been based on ribosomal RNA (rRNA) sequence comparisons, leading to the distinction of the two major archaeal phyla: the Euryarchaeota and the Crenarchaeota. Here, thanks to the recent sequencing of several archaeal genomes, we have constructed a phylogeny based on the fusion of the sequences of the 53 ribosomal proteins present in mo...

Eukaryotic organelles depend on nuclear genes to perpetuate their biochemical integrity. This is true for mitochondria in all eukaryotes and plastids in plants and algae. Then how do kleptoplasts, plastids that are sequestered by some sacoglossan sea slugs, survive in the animals' digestive gland cells in the absence of the algal nucleus encoding the vast majority of organellar proteins? For al...

In Leung et al. (2017), we provide evidence that Drosophila transposons have been major contributors to the expansion of the Drosophila ananassae fourth chromosome (Muller F element) arms. Dunning Hotopp and Klasson agree with this finding, but they take exception to our second conclusion, that lateral gene transfer (LGT) from theWolbachia endosymbiont of D. ananassae (wAna) had only a minor ro...

Over the last 10 years, DNA sequences of more than 600 bacterial species have been deposited in databases and are now available to search any gene, motif, or regulatory sequence of interest. Although genome data are instrumental in phylogenetic analysis and in silico design of metabolic and regulatory networks, only a very small fraction of the information has been experimentally validated. A s...

We extend the inequality of Tomboulis and Yaffe in SU(2) lattice gauge theory (LGT) to SU(N) LGT and to general classical spin systems, by use of reflection positivity. Basically the inequalities guarantee that a system in a box that is sufficiently insensitive to boundary conditions has a non-zero mass gap. We explicitly illustrate the theorem in some solvable models. Strong coupling expansion...