Investigations of gut microbiomes have shed light on the diversity and genetic content of these communities, and helped shape our understanding of how host-associated microorganisms influence host physiology, behavior, and health. Despite the importance of gut microbes to metazoans, our understanding of the changes in diversity and composition across the alimentary tract, and the source of the ...

Flooding affects both aboveand below-ground ecosystem processes. While the below-ground changes may be less obvious, they are as important as the above-ground changes. Soil microorganisms are sensitive to disturbance, and shifts in soil microbial community structure are expected when anaerobic conditions develop from flooding. The primary objective of these studies was to determine the effect o...

Spatial heterogeneity is an inherent feature of soils that has significant functional implications, particularly when the activities of soil microbial communities are considered. The main goal of this study was to determine the physical–chemical properties best correlated with changes in microbial community composition in an agricultural ecosystem, as part of an effort to better understand what...

The effects of petroleum contamination on the bacterial community of a pristine microbial mat from Salins-de-Giraud (Camargue, France) have been investigated. Mats were maintained as microcosms and contaminated with no. 2 fuel oil from the wreck of the Erika. The evolution of the complex bacterial community was monitored by combining analyses based on 16S rRNA genes and their transcripts. 16S r...

Forest soils store vast amounts of terrestrial carbon, but we are still limited in mechanistic understanding on how soil organic carbon (SOC) stabilization or turnover is controlled by biotic and abiotic factors in forest ecosystems. We used phospholipid fatty acids (PLFAs) as biomarker to study soil microbial community structure and measured activities of five extracellular enzymes involved in...

Microbial communities in engineered terrestrial haloalkaline environments have been poorly characterized relative to their natural counterparts and are geologically recent in formation, offering opportunities to explore microbial diversity and assembly in dynamic, geochemically comparable contexts. In this study, the microbial community structure and geochemical characteristics of three geograp...

Citation: Guo C, Xia X, Pitta P, Herut B, Rahav E, Berman-Frank I, Giannakourou A, Tsiola A, Tsagaraki TM and Liu H (2016) Shifts in Microbial Community Structure and Activity in the Ultra-Oligotrophic Eastern Mediterranean Sea Driven by the Deposition of Saharan Dust and European Aerosols. Front. Mar. Sci. 3:170. doi: 10.3389/fmars.2016.00170 Shifts in Microbial Community Structure and Activit...

Sediments are depositional areas where particles sink from water columns, but they are also microbial hotspots that play an important role in biogeochemical cycles. Unfortunately, the importance of both processes in structuring microbial community composition has not been assessed. We surveyed all organismic signals of the last ca. 170 years of sediment by metabarcoding, identifying global tren...

Previous studies have shown that forest floors from stands dominated by trembling aspen (ASPEN; Populus tremuloides Michx.) tend to support a greater microbial biomass with a different microbial community structure than forest floors from stands dominated by white spruce (SPRUCE; Picea glauca (Moench) Voss). A reciprocal transfer experiment, in concert with coarse and fine mesh bags that allowe...

Nutrient availability and ratios can play an important role in shaping microbial communities of freshwater ecosystems. The Cuatro Ciénegas Basin (CCB) in Mexico is a desert oasis where, perhaps paradoxically, high microbial diversity coincides with extreme oligotrophy. To better understand the effects of nutrients on microbial communities in CCB, a mesocosm experiment was implemented in a stoic...