نتایج جستجو برای: conformational disorder

تعداد نتایج: 633413  

Journal: :Journal of molecular biology 2005
Heike Blad Nicholas J Reiter Frits Abildgaard John L Markley Samuel E Butcher

The U6 RNA intramolecular stem-loop (ISL) is a conserved component of the spliceosome, and contains an essential metal ion binding site centered between a protonated adenine, A79, and U80. Correlated with protonation of A79, U80 undergoes a base-flipping conformational change accompanied by significant helical movement. We have investigated the dynamics of the U6 ISL by analyzing the power depe...

2016
Helena G. dos Santos Janelle Nunez-Castilla Jessica Siltberg-Liberles

Conformational and functional flexibility promote protein evolvability. High evolvability allows related proteins to functionally diverge and perhaps to neostructuralize. p53 is a multifunctional protein frequently referred to as the Guardian of the Genome-a hub for e.g. incoming and outgoing signals in apoptosis and DNA repair. p53 has been found to be structurally disordered, an extreme form ...

2016
Won-Seok Hwang Il-Buem Lee Seok-Cheol Hong Changbong Hyeon

Single molecule time trajectories of biomolecules provide glimpses into complex folding landscapes that are difficult to visualize using conventional ensemble measurements. Recent experiments and theoretical analyses have highlighted dynamic disorder in certain classes of biomolecules, whose dynamic pattern of conformational transitions is affected by slower transition dynamics of internal stat...

2018
Damiano Piovesan Francesco Tabaro Lisanna Paladin Marco Necci Ivan Micetic Carlo Camilloni Norman E. Davey Zsuzsanna Dosztányi Bálint Mészáros Alexander Miguel Monzon Gustavo D. Parisi Eva Schad Pietro Sormanni Peter Tompa Michele Vendruscolo Wim F. Vranken Silvio C. E. Tosatto

The MobiDB (URL: mobidb.bio.unipd.it) database of protein disorder and mobility annotations has been significantly updated and upgraded since its last major renewal in 2014. Several curated datasets for intrinsic disorder and folding upon binding have been integrated from specialized databases. The indirect evidence has also been expanded to better capture information available in the PDB, such...

Background: Immunoglobulins are a group of proteins that have important role in defense against microorganisms. Immunoglobulins consist of heavy and light chains. In human, immunoglobulin light chain comprises of two isotypes: Kappa (K) and lambda (λ) based on amino acid differences in carboxylic end of their constant region. Marked changes in the K to λ ratio can happen in monocl...

Journal: :ACS nano 2008
Svetlana Kilina Enrique R Batista Ping Yang Sergei Tretiak Avadh Saxena Richard L Martin Darryl L Smith

We investigate the role of conformational disorder and intermolecular interactions on the electronic structure of amorphous clusters of polyfluorenes. Classical molecular dynamics simulations are used to determine probable molecular geometries and chain packing, and first-principles density functional theory calculations are employed to determine electronic structure and orbital localization pr...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2011
Anwesha N Fernandes Lynne H Thomas Clemens M Altaner Philip Callow V Trevor Forsyth David C Apperley Craig J Kennedy Michael C Jarvis

The structure of cellulose microfibrils in wood is not known in detail, despite the abundance of cellulose in woody biomass and its importance for biology, energy, and engineering. The structure of the microfibrils of spruce wood cellulose was investigated using a range of spectroscopic methods coupled to small-angle neutron and wide-angle X-ray scattering. The scattering data were consistent w...

Journal: :Molecules 2015
Lin-Yan Wan Yan-Qiong Zhang Meng-Di Chen You-Qin Du Chang-Bai Liu Jiang-Feng Wu

Vitamin D Receptor (VDR) belongs to the nuclear receptor (NR) superfamily. Whereas the structure of the ligand binding domain (LBD) of VDR has been determined in great detail, the role of its amino acid residues in stabilizing the structure and ligand triggering conformational change is still under debate. There are 13 α-helices and one β-sheet in the VDR LBD and they form a three-layer sandwic...

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