Based on the connection between a quantum spin model and an asexual biological evolution model with a single-peak fitness function in parallel mutation-selection scheme, we solve exactly both static and dynamics of the evolution model. We find that relaxation in such a parallel scheme is faster than that in a connected scheme of Eigen model. Our method can also be extended to other fitness func...

Abstract We express the Crow-Kimura and Eigen models of quasispecies theory in a functional integral representation. We formulate the spin coherent state functional integrals using the Schwinger Boson method. In this formulation, we are able to deduce the long-time behavior of these models for arbitrary replication and degradation functions. We discuss the phase transitions that occur in these ...

We describe the singular value decomposition (SVD) of yeast genome-scale mRNA lengths distribution data measured by DNA microarrays. SVD uncovers in the mRNA abundance levels data matrix of genes x arrays, i.e., electrophoretic gel migration lengths or mRNA lengths, mathematically unique decorrelated and decoupled "eigengenes." The eigengenes are the eigenvectors of the arrays x arrays correlat...

Traditionally, infrared band assignment for the protonated water clusters, such as H(+)(H2O)5, is based on their lowest energy isomer. Recent experiments extend the observation spectral window to lower frequencies, for which such assignment appears to be inadequate. Because this hydrogen-bonded system is highly anharmonic, harmonic spectral calculations are insufficient for reliable interpretat...

A newly developed computational approach is proposed in the paper for the analysis of multiple crack problems based on the eigen crack opening displacement (COD) boundary integral equations. The eigen COD particularly refers to a crack in an infinite domain under fictitious traction acting on the crack surface. With the concept of eigen COD, the multiple cracks in great number can be solved by ...

Deformations in handwritten characters have classdependent tendencies. For example, characters of class “A” are often deformed by global slant transformation and never deformed to be similar to “R”. In this paper, the extraction and the utilization of such tendencies called eigen-deformations are investigated for better performance of elastic matching based recognition systems. The eigen-deform...

Verifiable random functions are pseudorandom functions producing publicly verifiable proofs for their outputs, allowing for efficient checks of the correctness of their computation. In this work, we introduce a new computational hypothesis, the n-Eigen-Value assumption, which can be seen as a relaxation of the Un MDDH assumption, and prove its equivalence with the n-Rank assumption. Based on th...

In the evolutionary computation research community, the performance of most evolutionary algorithms (EAs) depends strongly on their implemented coordinate system. However, the commonly used coordinate system is fixed and not well suited for different function landscapes, EAs thus might not search efficiently. To overcome this shortcoming, in this paper we propose a framework, named ACoS, to ada...