نتایج جستجو برای: formalin fixed paraffin embedded ffpe

تعداد نتایج: 308917  

2012
Tara Holley Elizabeth Lenkiewicz Lisa Evers Waibhav Tembe Christian Ruiz Joel R. Gsponer Cyrill A. Rentsch Lukas Bubendorf Mark Stapleton Doug Amorese Christophe Legendre Heather E. Cunliffe Ann E. McCullough Barbara Pockaj David Craig John Carpten Daniel Von Hoff Christine Iacobuzio-Donahue Michael T. Barrett

Formalin fixed paraffin embedded (FFPE) tissues are a vast resource of annotated clinical samples. As such, they represent highly desirable and informative materials for the application of high definition genomics for improved patient management and to advance the development of personalized therapeutics. However, a limitation of FFPE tissues is the variable quality of DNA extracted for analyse...

Journal: :Human mutation 2008
Roy Bastien Tracey B Lewis Jason E Hawkes John F Quackenbush Thomas C Robbins Juan Palazzo Charles M Perou Philip S Bernard

Identifying mutations in the TP53 gene is important for cancer prognosis, predicting response to therapy, and determining genetic risk. We have developed a high-throughput scanning assay with automatic calling to detect TP53 mutations in DNA from fresh frozen (FF) and formalin-fixed paraffin-embedded (FFPE) tissues. The coding region of the TP53 gene (exons 2-11) was PCR-amplified from breast c...

Journal: :BMC Biotechnology 2008
Britta Hasemeier Matthias Christgen Hans Kreipe Ulrich Lehmann

BACKGROUND During the last years the analysis of microRNA expression patterns has led to completely new insights into cancer biology. Furthermore, these patterns are a very promising tool for the development of new diagnostic and prognostic markers. However, most human tumour samples for which long term clinical records are available exist only as formalin-fixed paraffin-embedded specimens. The...

2017
Jing Wang Xue Yang Haofeng Chen Xuewei Wang Xiangyu Wang Yi Fang Zhenyu Jia Jidong Gao

RNA in formalin-fixed and paraffin-embedded (FFPE) tissues provides large amount of information indicating disease stages, histological tumor types and grades, as well as clinical outcomes. However, Detection of RNA expression levels in formalin-fixed and paraffin-embedded samples is extremely difficult due to poor RNA quality. Here we developed a high-throughput method, Reverse Transcription-M...

2017
Benjamin E Paluch Sean T Glenn Jeffrey M Conroy Antonios Papanicolau-Sengos Wiam Bshara Angela R Omilian Elizabeth Brese Mary Nesline Blake Burgher Jonathan Andreas Kunle Odunsi Kevin Eng Ji He Maochun Qin Mark Gardner Lorenzo Galluzzi Carl D Morrison

Current criteria for identifying cancer patients suitable for immunotherapy with immune checkpoint blockers (ICBs) are subjective and prone to misinterpretation, as they mainly rely on the visual assessment of CD274 (best known as PD-L1) expression levels by immunohistochemistry (IHC). To address this issue, we developed a RNA sequencing (RNAseq)-based approach that specifically measures the ab...

Journal: :Reports 2023

The implementation of next-generation sequencing (NGS) in clinical oncology has enabled the analysis multiple cancer-associated genes for diagnostics and treatment purposes. detection pathogenic likely mutations is crucial to manage disease. Obtaining mutational profile may be challenging samples with low yields DNA—reflected by type biological material, such as formalin-fixed paraffin-embedded...

Journal: :Urologic oncology 2012
Grégory Verhoest Jean-Jacques Patard Patricia Fergelot Florence Jouan Salim Zerrouki Stéphane Dreano Stéphanie Mottier Nathalie Rioux-Leclercq Marc G Denis

INTRODUCTION Literature controversies exist regarding the prognostic value of VHL mutations. The objective was to compare paraffin-embedded and frozen section specimens for VHL mutations detection and to evaluate the reliability of DNA analysis in formalin-fixed tissues. METHODS Seventy-six patients with clear cell renal cell carcinoma (RCC) previously assessed for VHL status from frozen samp...

Journal: :Cancer research 2015
Sarah R Greytak Kelly B Engel B Paige Bass Helen M Moore

Formalin-fixed and paraffin-embedded (FFPE) tissue biospecimens are a valuable resource for molecular cancer research. Although much can be gained from their use, it remains unclear whether the genomic and expression profiles obtained from FFPE biospecimens accurately reflect the physiologic condition of the patient from which they were procured, or if such profiles are confounded by biologic e...

Journal: :Clinical chemistry 2015
Hongdo Do Alexander Dobrovic

BACKGROUND Precision medicine is dependent on identifying actionable mutations in tumors. Accurate detection of mutations is often problematic in formalin-fixed paraffin-embedded (FFPE) tissues. DNA extracted from formalin-fixed tissues is fragmented and also contains DNA lesions that are the sources of sequence artifacts. Sequence artifacts can be difficult to distinguish from true mutations, ...

Journal: :Journal of Investigative Dermatology 2022

Since there are only a few tissue markers used in the routine histopathology of melanoma, is an unmet need for novel protein discovery both prognostic and predictive implications. Our introduction formalin-fixed paraffin-embedded (FFPE) melanoma samples provides new opportunities to understand progression melanoma. The study was based on previously archived 175 human FFPE primary metastatic whi...

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