نتایج جستجو برای: genomics databases

تعداد نتایج: 136878  

Journal: :Nucleic Acids Research 2006
Roy R. Chaudhuri Mark J. Pallen

The schema of the previously described Escherischia coli database coliBASE has been applied to a number of other bacterial taxa, under the collective name xBASE. The new databases include CampyDB for Campylobacter, Helicobacter and Wolinella; PseudoDB for pseudomonads; ClostriDB for clostridia; RhizoDB for Rhizobium and Sinorhizobium; and MycoDB, for Mycobacterium, Streptomyces and related orga...

2009
Peter J. Bickel James B. Brown Haiyan Huang Qunhua Li

The landscape of Genomics has changed drastically in the last two decades. Increasingly inexpensive sequencing has shifted the primary focus from the acquisition of biological sequences to the study of biological function. Assays have been developed to study many intricacies of biological systems, and publicly available databases have given rise to integrative analyses that combine information ...

Journal: :Philosophical transactions. Series A, Mathematical, physical, and engineering sciences 2009
Peter J Bickel James B Brown Haiyan Huang Qunhua Li

The landscape of genomics has changed drastically in the last two decades. Increasingly inexpensive sequencing has shifted the primary focus from the acquisition of biological sequences to the study of biological function. Assays have been developed to study many intricacies of biological systems, and publicly available databases have given rise to integrative analyses that combine information ...

2008
Paul Flicek Bronwen L. Aken Kathryn Beal Benoît Ballester Mario Cáccamo Yuan Chen Laura Clarke Guy Coates Fiona Cunningham Tim Cutts Thomas A. Down S. C. Dyer T. Eyre Stephen Fitzgerald Julio Fernandez-Banet Stefan Gräf Syed Haider Martin Hammond Richard C. G. Holland Kevin L. Howe Kerstin Howe Nathan Johnson Andrew M. Jenkinson Andreas Kähäri Damian Keefe Felix Kokocinski Eugene Kulesha Daniel Lawson Ian Longden Karyn Megy Patrick Meidl Bert Overduin Anne Parker Bethan Pritchard Andreas Prlic S. Rice Daniel Rios Michael Schuster Ian Sealy Guy Slater Damian Smedley Giulietta Spudich Stephen J. Trevanion Albert J. Vilella Jan Vogel Simon White M. Wood Ewan Birney Antony Cox Val Curwen Richard Durbin Xosé M. Fernández-Suárez Javier Herrero Tim J. P. Hubbard Arek Kasprzyk Glenn Proctor James A. Smith Abel Ureta-Vidal Stephen M. J. Searle

The Ensembl project (http://www.ensembl.org) is a comprehensive genome information system featuring an integrated set of genome annotation, databases and other information for chordate and selected model organism and disease vector genomes. As of release 47 (October 2007), Ensembl fully supports 35 species, with preliminary support for six additional species. New species in the past year includ...

Journal: :Bioinformatics 2007
Ewa Urbanczyk-Wochniak Lloyd W. Sumner

MOTIVATION There is an imperative need to integrate functional genomics data to obtain a more comprehensive systems-biology view of the results. We believe that this is best achieved through the visualization of data within the biological context of metabolic pathways. Accordingly, metabolic pathway reconstruction was used to predict the metabolic composition for Medicago truncatula and these p...

2018
Daniel R. Zerbino Premanand Achuthan Wasiu A. Akanni M. Ridwan Amode Daniel Barrell Jyothish Bhai Konstantinos Billis Carla A. Cummins Astrid Gall Carlos García-Girón Laurent Gil Leo Gordon Leanne Haggerty Erin Haskell Thibaut Hourlier Osagie G. Izuogu Sophie H. Janacek Thomas Juettemann Jimmy Kiang To Matthew R. Laird Ilias Lavidas Zhicheng Liu Jane Loveland Thomas Maurel William M. McLaren Benjamin Moore Jonathan M. Mudge Daniel N. Murphy Victoria Newman Michael Nuhn Denye Ogeh Chuang Kee Ong Anne Parker Mateus Patricio Harpreet Singh Riat Helen Schuilenburg Daniel Sheppard Helen Sparrow Kieron Taylor Anja Thormann Alessandro Vullo Brandon Walts Amonida Zadissa Adam Frankish Sarah E. Hunt Myrto Kostadima Nicholas Langridge Fergal J. Martin Matthieu Muffato Emily Perry Magali Ruffier Daniel M. Staines Stephen J. Trevanion Bronwen L. Aken Fiona Cunningham Andrew D. Yates Paul Flicek

The Ensembl project has been aggregating, processing, integrating and redistributing genomic datasets since the initial releases of the draft human genome, with the aim of accelerating genomics research through rapid open distribution of public data. Large amounts of raw data are thus transformed into knowledge, which is made available via a multitude of channels, in particular our browser (htt...

2009
Gaëtan Droc Christophe Périn Sébastien Fromentin Pierre Larmande

OryGenesDB (http://orygenesdb.cirad.fr/index.html) is a database developed for rice reverse genetics. OryGenesDB contains FSTs (flanking sequence tags) of various mutagens and functional genomics data, collected from both international insertion collections and the literature. The current release of OryGenesDB contains 171,000 FSTs, and annotations divided among 10 specific categories, totaling...

Journal: :Mammalian Biology 2021

Abstract A new and uniquely structured matrix of mammalian phenotypes, MaTrics ( Ma mmalian Tr aits for Comparative Genom ics ) in a digital form is presented. By focussing on species which genome assemblies are available, provides an interface between mammalogy comparative genomics. was developed within project aimed to find genetic causes phenotypic traits mammals using Forward Genomics. This...

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