Over the past decade, Euclidean distance matrices, or EDMs, have been receiving increased attention for two main reasons. The first reason is that the many applications of EDMs, such as molecular conformation in bioinformatics, dimensionality reduction in machine learning and statistics, and especially the problem of wireless sensor network localization, have all become very active areas of res...

A Euclidean distance matrix is one in which the (i, j) entry specifies the squared distance between particle i and particle j. Given a partially-specified symmetric matrix A with zero diagonal, the Euclidean distance matrix completion problem (EDMCP) is to determine the unspecified entries to make A a Euclidean distance matrix. We survey three different approaches to solving the EDMCP.We advoca...

Within image analysis the distance transform has many applications. The distance transform measures the distance of each object point from the nearest boundary. For ease of computation, a commonly used approximate algorithm is the chamfer distance transform. This paper presents an efficient linear-time algorithm for calculating the true Euclidean distance-squared of each point from the nearest ...

A new linear time scanning algorithm for the exact Euclidean distance transform is presented. It is shorter and uses a smaller data structure than the approximating algorithms of Danielsson. The algorithm consists of two phases. The rst phase uses two scans per line to compute the distance transform over the columns of the image. Then the second phase uses two scans per row. Informally speaking...

The set of Euclidean distance matrices has a well-known representation as a convex cone. The problems of representing the group averages of K distance matrices are discussed, but not fully resolved, in the context of SMACOF, Generalized Orthogonal Procrustes Analysis and Individual Differences Scaling. The polar (or dual) cone representation, corresponding to inner-products around a centroid, i...

In molecular biology, the issue of quantifying the similarity between two biological sequences is very important. Past research has shown that word-based search tools are computationally efficient and can find some new functional similarities or dissimilarities invisible to other algorithms like FASTA. Recently, under the independent model of base composition, Wu, Burke, and Davison (1997, Biom...