We develop a mean-field theory for Escherichia coli chemotaxis based on the coupled spatiotemporal dynamics of the cell population and the mean receptor methylation level field. This multiscale model connects the cells' population level motility behavior with the molecular level pathway dynamics. It reveals a simple scaling dependence of the chemotaxis velocity on the adaptation rate in exponen...

A first principles-based mean field model was developed for the oxygen reduction reaction (ORR) taking account of the coverage- and material-dependent reversible potentials of the elementary steps. This model was applied to the simulation of single crystal surfaces of Pt, Pt alloy and Pt core-shell catalysts under Ar and O(2) atmospheres. The results are consistent with those shown by past expe...

a profile hidden markov model (phmm) is widely used in assigning protein sequences to protein families. in this model, the hidden states only depend on the previous hidden state and observations are independent given hidden states. in other words, in the phmm, only the information of the left side of a hidden state is considered. however, it makes sense that considering the information of the b...

in a previous paper, the second author established that, given finite fields $f < e$ and certain subgroups $c leq e^times$, there is a galois connection between the intermediate field lattice ${l mid f leq l leq e}$ and $c$'s subgroup lattice. based on the galois connection, the paper then calculated the irreducible, complex character degrees of the semi-direct product $c rtimes {rm gal} (e/f)$...