نتایج جستجو برای: rna inverse folding

تعداد نتایج: 366102  

Journal: :Journal of Biotechnology 2017

Journal: :Magnetic resonance 2021

Abstract. The review describes the application of nuclear magnetic resonance (NMR) spectroscopy to study kinetics folding, refolding and aggregation proteins, RNA DNA. Time-resolved NMR experiments can be conducted in a reversible or an irreversible manner. In particular, folding pose large requirements for (i) signal-to-noise due time limitations (ii) synchronising steps. Thus, this contributi...

Journal: :Cell reports 2012
Fan Li Qi Zheng Paul Ryvkin Isabelle Dragomir Yaanik Desai Subhadra Aiyer Otto Valladares Jamie Yang Shelly Bambina Leah R Sabin John I Murray Todd Lamitina Arjun Raj Sara Cherry Li-San Wang Brian D Gregory

The secondary structure of RNA is necessary for its maturation, regulation, processing, and function. However, the global influence of RNA folding in eukaryotes is still unclear. Here, we use a high-throughput, sequencing-based, structure-mapping approach to identify the paired (double-stranded RNA [dsRNA]) and unpaired (single-stranded RNA [ssRNA]) components of the Drosophila melanogaster and...

Journal: :Journal of biomolecular structure & dynamics 1997
V A Farutin A A Gorin E M Zdobnov V I Ivanov

Earlier a three-dimensional model for a new unusual DNA conformation referred to as Slipped Loop Structure (SLS) has been suggested by us (1). The same type of folding could occur with RNA as well which means that one must use the A-form of the double helix rather than the B-one. The present paper discusses the creation of an all-atom stereochemically sound model for SLS-RNA. This calculated mo...

2008
Andreas R. Gruber Ronny Lorenz Stephan H. Bernhart Richard Neuböck Ivo L. Hofacker

The Vienna RNA Websuite is a comprehensive collection of tools for folding, design and analysis of RNA sequences. It provides a web interface to the most commonly used programs of the Vienna RNA package. Among them, we find folding of single and aligned sequences, prediction of RNA-RNA interactions, and design of sequences with a given structure. Additionally, we provide analysis of folding lan...

Journal: :Annual Review of Biophysics 2010

2007
Bruce A. Shapiro Wojciech Kasprzak

RNA folding pathways are proving to be quite important in the determination of RNA function. Studies indicate that RNA may enter intermediate and multiple conformational states that are key to its functionality. These states may have a significant impact on gene expression and molecular function. It is known that the biologically functional states of RNA molecules may not correspond to their mi...

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